Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0232
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 42 4e-04
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 42 6e-04
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 41 0.001
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.002
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 39 0.003
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 37 0.012
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 37 0.016
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.021
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.021
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.028
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 35 0.049
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 35 0.049
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.065
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 34 0.11
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 34 0.11
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.11
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.34
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.46
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.46
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.46
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 31 0.60
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26) 31 0.60
SB_42391| Best HMM Match : Hydrolase (HMM E-Value=5.1e-17) 31 1.1
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.1
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7) 29 3.2
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.2
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 29 4.2
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 28 5.6
SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49) 28 7.4
SB_33565| Best HMM Match : SET (HMM E-Value=3.99931e-42) 28 7.4
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 28 7.4
SB_6969| Best HMM Match : Astacin (HMM E-Value=0) 28 7.4
SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71) 28 7.4
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3) 27 9.8
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 LDFARTRLAAD--VGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASY 179
LD+ RTRLA D VGK G+R+F+G+ + K SDGL+GLYRGF +S GII+YR Y
Sbjct: 134 LDYCRTRLANDAKVGKKGGERQFNGMIDVYKKTIASDGLVGLYRGFVISCVGIIVYRGFY 193
Query: 180 FGFYDTARGMLPDPKNTPIVISWAI 254
FG YDT + +L ++ +VIS+ +
Sbjct: 194 FGLYDTLKPILLG-EDAGVVISFVL 217
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/74 (50%), Positives = 46/74 (62%)
Frame = +2
Query: 263 VTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVF 442
VT AG+ SYP DT+RRRMMM SG A + YK +I C I K EG + KGA +N+
Sbjct: 221 VTVSAGLASYPIDTIRRRMMMTSGEA---VKYKGSIDCTIQILKKEGAMSLMKGAGANIL 277
Query: 443 RGTGGAFVLVLYDE 484
RG GA VL +D+
Sbjct: 278 RGMAGAGVLAGFDK 291
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 320 MMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVFR 445
M+++GR D YK I C + ++EG +F++G +N R
Sbjct: 43 MLKAGRL--DHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIR 82
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 66 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNT 230
+ G+ +C S+ ++S+G + +RG + +A F F D + + PK T
Sbjct: 53 YKGVIDCTSRTYRSEGFLSFWRGNLANCIRYFPTQALNFAFKDQVKALF-KPKKT 106
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +2
Query: 272 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVFR 445
V+ +YP D VRRRM M+ RA D YK+T+H +++I K EG +KG + N+ +
Sbjct: 174 VSQTATYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSIVKLEGFRGLYKGMWPNILK 229
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQRE-FSGLGNCISKIFKSDGLIGLYRGFGVSVQGII-IYRAS 176
PLD + RL G++ F+G +C K +++G GLY+G + G+ I+
Sbjct: 46 PLDTIKVRLQTMPRPKPGEKPMFTGTFDCAMKTIRNEGFFGLYKGMAAPITGVTPIFAIC 105
Query: 177 YFGFYDTARGMLPDPKNTP 233
++GF + + DP P
Sbjct: 106 FWGFNMGKKLQMKDPNADP 124
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +3
Query: 63 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDT-ARGMLP 215
++SG+G ++KI++ +GL G ++G G ++ I+ Y A F Y+ +G+ P
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKKGIAP 641
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 287 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVFR 445
+YP D VRRRM M+ G Y +T + I ++EG FKG + N+ +
Sbjct: 699 TYPLDVVRRRMQMERGEGM--FKYSSTWDGFKVIVRSEGFIGLFKGMWPNLLK 749
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
PLD R R+ + +G+G ++S + I +S+G IGL++G ++ + F
Sbjct: 701 PLDVVRRRMQME--RGEGMFKYSSTWDGFKVIVRSEGFIGLFKGMWPNLLKVAPTIGIQF 758
Query: 183 GFYDTARGML 212
Y+ ++ +
Sbjct: 759 AVYEVSKSAM 768
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/67 (32%), Positives = 37/67 (55%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
PLD R RLA K +++GL N ++I++ +G+ YRG+ ++ GI+ Y F
Sbjct: 9 PLDMVRARLAITQKK-----KYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISF 63
Query: 183 GFYDTAR 203
Y+T +
Sbjct: 64 FTYETCK 70
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 266 TTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG---AFSN 436
T +A + YP + ++ R+ +Q KS+ YK H TI + EG A +KG +F
Sbjct: 163 TLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYKGVTPSFLG 221
Query: 437 VFRGTGGAFV 466
+F GG+F+
Sbjct: 222 LFPFAGGSFL 231
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 72 GLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWA 251
GL + ++K +G+ ++G GVS + Y A + ++ L DP N + S +
Sbjct: 96 GLIRTFASVYKREGIKAFWKGNGVSCIRLFPYSAVQYAAFNRIVASLEDPHNGELSDSGS 155
Query: 252 IL 257
+L
Sbjct: 156 ML 157
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 290 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 424
YP D V+ RM Q +++ +YKN+I C+ + + EG ++G
Sbjct: 932 YPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRG 976
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
P+D +TR+ + ++ + +C K+ +++G IGLYRG + G+ +A
Sbjct: 933 PIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVSPEKAIKL 992
Query: 183 GFYDTARGMLPD 218
D RG+ D
Sbjct: 993 TTNDFVRGIFSD 1004
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 260 TVTTVAGIISYPFDTVRRRMMMQS---GRAKSDILYKNTIHCWATIAKTEGTSAFFKGAF 430
T + A + P + V+ RM +Q R + Y+N H TIAK EG A KG F
Sbjct: 13 TAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAMQKGLF 72
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 134
PLD +TRL + + G+ ++G+ +C KI+ ++GL Y+G
Sbjct: 225 PLDVIKTRLQL-LNRPQGEPNYNGIIDCAKKIYSNEGLAAFYKG 267
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 275 AGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGA 427
A + P D ++ R+ + + R + + Y I C I EG +AF+KGA
Sbjct: 219 ASVAVNPLDVIKTRLQLLN-RPQGEPNYNGIIDCAKKIYSNEGLAAFYKGA 268
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 57 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY 191
Q ++G +C+ K+F S+GL G +RG ++ I A YFG +
Sbjct: 294 QMAYTGSLDCLKKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSF 338
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 66 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFG 185
++G+ +C +I K + ++GLY+G + G+ + A FG
Sbjct: 191 YNGVFDCFKQIIKRESVLGLYKGMASPLAGLGLINAIIFG 230
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 3 PLDFARTRLAAD--VGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 134
P+D ++ AD G Q +++G +C+ KI+ S G+ +G
Sbjct: 377 PVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQG 422
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 63 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 212
+FSG+ + K++G+ L++G G ++ G+ RA YF Y + ML
Sbjct: 773 KFSGIVPYARYMVKNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDML 822
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
P + ARTRL + G++++ + + + +G GLY G G V + A F
Sbjct: 951 PHEVARTRLRQQESEFLGRQKYRSFFQTLGTVLREEGWRGLYGGLGTHVIRQVPNTAIMF 1010
Query: 183 GFYDTARGMLPD 218
Y+ +L D
Sbjct: 1011 FTYEGVVYILRD 1022
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 35.9 bits (79), Expect = 0.028
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLI-GLYRGFGVSVQGIIIYRASY 179
PLD R R+ DG + ++ N + ++K DG+ GLYRG ++ + A
Sbjct: 192 PLDVVRRRMQLAGAVPDGHK-YNTCINTLVNVYKDDGIRRGLYRGLSINYLRVCPQVAIM 250
Query: 180 FGFYDTARGML 212
FG Y+ + L
Sbjct: 251 FGVYEVTKQFL 261
Score = 33.1 bits (72), Expect = 0.20
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
PLD R+RLA V + G + CIS K G LY+GF ++ + I A
Sbjct: 84 PLDMVRSRLAFQVAQDQGYTTITQTIRCIS--VKEGGPKALYKGFVPTL--LTIVPAMGI 139
Query: 183 GFY 191
GFY
Sbjct: 140 GFY 142
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 272 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSAFFKGAFSNVFR 445
V+ I+YP D VRRRM + +G Y I+ + K +G ++G N R
Sbjct: 185 VSQTIAYPLDVVRRRMQL-AGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLR 242
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 287 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 424
+YP D VR R+ Q + + TI C + K G A +KG
Sbjct: 82 TYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS--VKEGGPKALYKG 125
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 35.9 bits (79), Expect = 0.028
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
PL+ +TRLA + GQ + GL + S I++ +G+ YRG S+ GII Y
Sbjct: 250 PLEVLKTRLAI---RKTGQ--YRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGIDL 304
Query: 183 GFYDTAR 203
Y+T +
Sbjct: 305 AVYETLK 311
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 PLDFARTRLAADVG-KGDGQREFSGLGNCISKIFKSDGLIGLYRG 134
PL RTRL A KG GQ + + + + KI DG GLYRG
Sbjct: 347 PLSLVRTRLQAQAREKGGGQGD--NMVSVLRKIITEDGFKGLYRG 389
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 35.1 bits (77), Expect = 0.049
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 272 VAGIISYPFDTVRRRMMMQSGRAKSD--ILYKNTIHCWATIAKTEGTSAFFKGAFSNVFR 445
V I P D + +M +Q RA+S I Y+N H TIA+T G ++G + + R
Sbjct: 214 VVAFIEGPIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVR 273
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 266 TTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 424
T +A + YP + ++ R+ +Q KS+ YK H TI + EG A +KG
Sbjct: 432 TLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYKG 483
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 34.7 bits (76), Expect = 0.065
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 275 AGIISYPFDTVRRRMM-MQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 424
A ++ +P DT++ R+ M + +YKN+ C+ I + EG F+G
Sbjct: 52 ANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRG 102
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVS 146
PLD R + + K G + G +C+ +I++ G+ G+Y+G V+
Sbjct: 157 PLD--RVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVYKGISVT 202
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 137
P+D A+TR+ ++ DG+ E+ G + +++I +++G+ L++GF
Sbjct: 113 PVDIAKTRIQ-NMRIIDGKPEYKGTMDVLARIVRNEGVFALWKGF 156
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
P ++ +T+L D + + + G +C+ K K G++GLYRG + G + + F
Sbjct: 60 PTEYVKTQLQLD--EKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASVRF 117
Query: 183 GFYDTARGMLPD 218
++ + + D
Sbjct: 118 AVFEYLKNKMAD 129
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 18 RTRLAADVGKGDGQR-EFSGLGNCISKIFKSDGLIGLYRGFG 140
R + V K G + + GLG+C+ +++++ GL G+++G G
Sbjct: 183 RVKCLLQVQKESGTKARYQGLGDCLLQVYRTGGLRGVFKGLG 224
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 3 PLDFARTRLAADV-GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASY 179
P+D + +L K + + G +C+ K+++S GL G ++G V+ I A Y
Sbjct: 53 PVDLVKIKLQMQTEAKRSTRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGFAVY 112
Query: 180 FGFYD 194
FG Y+
Sbjct: 113 FGVYE 117
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLI-GLYRGFGVSVQGIIIYRASY 179
PLD R R+ DG + +S N ++ DG+ GLYRG ++ + A
Sbjct: 126 PLDVVRRRMQLAGTVADGHK-YSTCINTFISVYTEDGIRRGLYRGLSINYLRVCPQVAVM 184
Query: 180 FGFYDTARGML 212
F Y+ + +L
Sbjct: 185 FAVYEVVKQLL 195
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 284 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSAFFKGAFSNVFR 445
++YP D VRRRM + +G Y I+ + ++ +G ++G N R
Sbjct: 123 LAYPLDVVRRRMQL-AGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSINYLR 176
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQR-EFSGLGNCISKIFKSDGLIGLYRGF 137
P+D RTR G+ + G +CI K + +G++ LY+GF
Sbjct: 231 PVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYKGF 276
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 272 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVFR 445
+ I+ P D V+ R Q+ + I YKN H + IAK EG + G V R
Sbjct: 127 IGSAIATPTDLVKIRF--QAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPTVKR 182
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 66 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 212
+ G+ +C + +FK +G+ YR + + I ++ +F Y+ AR L
Sbjct: 32 YRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKAL 80
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 293 PFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 421
P + +++R+ M Y+ IHC ++ K EG AF++
Sbjct: 17 PIEVIKQRLQMYGSP------YRGVIHCATSVFKEEGIRAFYR 53
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 31.9 bits (69), Expect = 0.46
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQRE-FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASY 179
PLD + RL A G+ F G +C K + +GL GLY+G + ++ ++
Sbjct: 40 PLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLYKGMLSPL--LMATPSTA 97
Query: 180 FGFYDTARG---MLPDPKNTPIVISW 248
FY + G L DP P ++ +
Sbjct: 98 LTFYSLSVGKRIQLSDPYQEPTLVQY 123
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 81 NCISKIFKSDGLIGLYRGFGVSVQGIIIY 167
+C I++ +G+ G YRGFG + ++Y
Sbjct: 332 DCFRTIYQQEGIFGFYRGFGALLIQCVVY 360
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Frame = +2
Query: 272 VAGIISYPFDTVRRRMMMQSGRAKSDIL------------YKNTIHCWATIAKTEGTSAF 415
V +I YPF+TV R+ +Q R D L Y + + C+ TI + EG F
Sbjct: 287 VPDLILYPFETVLHRLYIQGTRTIIDDLDNAADVIPLSTNYFSMLDCFRTIYQQEGIFGF 346
Query: 416 FKG 424
++G
Sbjct: 347 YRG 349
>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
Length = 205
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
PLD + R+ D +++ + N K DG+ GL RG+ + G + F
Sbjct: 75 PLDLVKCRIQVD------PKKYGSMVNGFKITLKEDGVRGLARGWAPTFIGYSMQGLGKF 128
Query: 183 GFYDTARGM 209
GFY+ + M
Sbjct: 129 GFYEVFKIM 137
>SB_42391| Best HMM Match : Hydrolase (HMM E-Value=5.1e-17)
Length = 254
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -1
Query: 352 DIALGTTRLHHHAPTDCVEGIGDDTGDCGYGLRMAQLITMGVFLGSGS 209
D AL R + PT V IGD T D G G +T+GV G+GS
Sbjct: 183 DNALNICRNLNVCPTKTVV-IGDTTADTGMGRSAGLGLTVGVLSGAGS 229
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
PLD R RL ++G+ + + +I +G+ GLY+G S+ I +
Sbjct: 48 PLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLVPSLVSIAPFLGVQQ 107
Query: 183 GFYD 194
YD
Sbjct: 108 SVYD 111
>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 272
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 76 RPENSRWPSPLPTSAARRVRAKSRG 2
RP +SR S P+SA+RR ++SRG
Sbjct: 221 RPSSSRPSSARPSSASRRASSRSRG 245
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 326 QSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVFRGTGGAFVLV-LYDE 484
Q R D Y+ + T+ KTEG +KG + R A + + LYD+
Sbjct: 56 QGVRTTHDAHYRGMLGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQ 109
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 66 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD 218
+ G+ + +FK++G+ +Y+G + + + + G YD + M D
Sbjct: 66 YRGMLGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMYGD 116
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
P + + R AD G R SG ++I +++G+ GL++G ++ + +
Sbjct: 144 PTEVVKIRFQADAG-----RYTSGTMGTYAEIARNEGMKGLWKGVFPNMARLCTVNVTEL 198
Query: 183 GFYDTARGM 209
YD+ +G+
Sbjct: 199 VVYDSIKGL 207
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 163 MMIPCTDTPKPLYRPIRPSDLKILLMQ 83
+++PC P LYR +RP L+I + Q
Sbjct: 587 IILPCPSDPCSLYRELRPQALQIQMSQ 613
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 483 SSYKTSTKAPPVPLKTLEKAP--LKKAEVPSVLAMVAQQWMVFLYRIS 346
S Y TST+ VPL T E P L+ A+ P+ QW V ++
Sbjct: 249 SPYHTSTRMLTVPLITPESKPWILRFADEPADTTFAHTQWAVLTCHVA 296
>SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49)
Length = 351
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 45 KGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 212
+G+ +E +GLG+ + + S G IGL G VQ +I+ + + G D R ++
Sbjct: 104 EGEMPKEATGLGDQVRSVIMSKGAIGL----GDQVQSVIMSKRA-IGLGDQVRSVI 154
>SB_33565| Best HMM Match : SET (HMM E-Value=3.99931e-42)
Length = 601
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 298 EGIGDDTGDCGYGLRMAQLITMGVFL 221
+G GD GD G+G+R I GVFL
Sbjct: 345 DGDGDGDGDDGWGVRALCPIPQGVFL 370
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 3 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQ----GIIIYR 170
P+D +L G+GD + + G I + F G G Y+G+ S+ I+
Sbjct: 125 PVDIISQKLMIQ-GQGDRKVKLKGARILIRETFHQHGPGGFYKGYFASLMTYAPSSAIWW 183
Query: 171 ASYFGFYDTARGML 212
ASY GFY G L
Sbjct: 184 ASY-GFYTGVIGNL 196
>SB_6969| Best HMM Match : Astacin (HMM E-Value=0)
Length = 225
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 72 GLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASY-FGFY 191
G C S + + G+ + GFG QG++++ + GFY
Sbjct: 88 GFSKCWSYVGRIGGMQKISIGFGCFTQGVVVHEIGHALGFY 128
>SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71)
Length = 238
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 45 KGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 212
+G+ +E +GLG+ + + S G IGL G VQ +I+ + + G D R ++
Sbjct: 55 EGEMPKEATGLGDQVRSVIMSKGAIGL----GDQVQSVIMSKRA-IGLGDQVRSVI 105
>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
Length = 321
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 471 TSTKAPPVPLKTLEKAPLK 415
TST++ P P KTLEKA +K
Sbjct: 27 TSTQSHPEPYKTLEKATVK 45
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 69 SGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 212
SG+ + +I ++DG GL+RG + + +FG Y+ +R ML
Sbjct: 151 SGVIDVTMQIIRNDGFQGLFRGMTATWAREVPGYFFFFGGYEFSRYML 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,360,947
Number of Sequences: 59808
Number of extensions: 336925
Number of successful extensions: 1037
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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