Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0232
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   159   2e-41
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   159   2e-41
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.62 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  159 bits (387), Expect = 2e-41
 Identities = 70/84 (83%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
           PLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YF
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYF 194

Query: 183 GFYDTARGMLPDPKNTPIVISWAI 254
           GFYDTARGMLPDPK TP +ISW I
Sbjct: 195 GFYDTARGMLPDPKKTPFLISWGI 218



 Score =  144 bits (349), Expect = 6e-37
 Identities = 66/79 (83%), Positives = 72/79 (91%)
 Frame = +2

Query: 248 GHPQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGA 427
           G  Q VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGA
Sbjct: 217 GIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGA 276

Query: 428 FSNVFRGTGGAFVLVLYDE 484
           FSN+ RGTGGA VLVLYDE
Sbjct: 277 FSNILRGTGGALVLVLYDE 295



 Score = 30.3 bits (65), Expect = 0.017
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 293 PFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVFR 445
           P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++G  +NV R
Sbjct: 30  PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82



 Score = 28.7 bits (61), Expect = 0.051
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 290 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 424
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 134
           P D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 232 PFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 57  QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 194
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  159 bits (387), Expect = 2e-41
 Identities = 70/84 (83%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 182
           PLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YF
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYF 194

Query: 183 GFYDTARGMLPDPKNTPIVISWAI 254
           GFYDTARGMLPDPK TP +ISW I
Sbjct: 195 GFYDTARGMLPDPKKTPFLISWGI 218



 Score =  144 bits (349), Expect = 6e-37
 Identities = 66/79 (83%), Positives = 72/79 (91%)
 Frame = +2

Query: 248 GHPQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGA 427
           G  Q VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGA
Sbjct: 217 GIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGA 276

Query: 428 FSNVFRGTGGAFVLVLYDE 484
           FSN+ RGTGGA VLVLYDE
Sbjct: 277 FSNILRGTGGALVLVLYDE 295



 Score = 30.3 bits (65), Expect = 0.017
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 293 PFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVFR 445
           P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++G  +NV R
Sbjct: 30  PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82



 Score = 28.7 bits (61), Expect = 0.051
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 290 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 424
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 134
           P D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 232 PFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 57  QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 194
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 502 NLSKNCYHNFYVIP 543
           NLS+N YH F ++P
Sbjct: 296 NLSQNSYHEFQILP 309


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 489 LISSYKTSTKAPPVPLKTLEKAPL 418
           L++++KT T+ P    K LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,122
Number of Sequences: 438
Number of extensions: 3147
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)