Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0231
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4N5V6 Cluster: Putative uncharacterized protein; n=3; ...    34   2.4  
UniRef50_A0DVY6 Cluster: Chromosome undetermined scaffold_66, wh...    34   3.2  
UniRef50_Q8IAV6 Cluster: Putative uncharacterized protein PF08_0...    33   7.4  
UniRef50_Q5CSS5 Cluster: Extracellular membrane associated prote...    33   7.4  
UniRef50_Q23F40 Cluster: Zinc finger domain, LSD1 subclass famil...    33   7.4  
UniRef50_Q6BV79 Cluster: Similar to CA2521|IPF4317 Candida albic...    33   7.4  

>UniRef50_Q4N5V6 Cluster: Putative uncharacterized protein; n=3;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 667

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +1

Query: 22  KFLMKLYTFNK*SK*-TQSNYVHLHSTKIERAQRYITHLNNNELNVLKKIEFCFLITTNI 198
           K  +KLYTF       T S+ V +  TK+     ++THLN+ E N+   IEF    TTN+
Sbjct: 404 KMCLKLYTFILFLIFPTTSHKVPIFFTKLFNTDTHLTHLNSPEQNLQPGIEFQHPQTTNL 463

Query: 199 GVN*FSVNVN 228
                + NVN
Sbjct: 464 NTT-TNNNVN 472


>UniRef50_A0DVY6 Cluster: Chromosome undetermined scaffold_66, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_66,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 465

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = -3

Query: 387 NNYLYNDQTDNTSY----LNLNFSYLHS-SYKIYM*SHRGIHYM*LIILFPTPLVILK 229
           NNY+Y D   N       LN N+ +  S   K YM S++GI+Y  L+ L  TPLV L+
Sbjct: 13  NNYMYFDNQVNPKIQKEALNKNYQFEASPKKKEYMKSYQGINYHSLLELKQTPLVKLQ 70


>UniRef50_Q8IAV6 Cluster: Putative uncharacterized protein
           PF08_0089; n=2; Plasmodium|Rep: Putative uncharacterized
           protein PF08_0089 - Plasmodium falciparum (isolate 3D7)
          Length = 2651

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -3

Query: 420 FT*IYK-MSNHFNNYLYNDQTDNTSYLNLNFSYLHSSYKIYM 298
           F  +Y+ +SN+ NNY+ N+  +N +  N +  Y H++YK YM
Sbjct: 242 FNLLYEYLSNNNNNYINNNNNNNNN--NKHDEYSHNAYKSYM 281


>UniRef50_Q5CSS5 Cluster: Extracellular membrane associated protein
            with a signal peptide, EGF domain, 9x transmembrane
            domains and a pentraxin domain; n=4; Eukaryota|Rep:
            Extracellular membrane associated protein with a signal
            peptide, EGF domain, 9x transmembrane domains and a
            pentraxin domain - Cryptosporidium parvum Iowa II
          Length = 3008

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 441  N*NNVSSFT*IYKMSNHFNNYLYNDQTDNTSYLNLNFS-YLHSSY 310
            N NN +++   Y  +N++NNY  N   +N +Y+N N S Y+   +
Sbjct: 2379 NNNNYNNYNNNYYNNNYYNNYNNNININNNNYINNNTSNYIEKGF 2423


>UniRef50_Q23F40 Cluster: Zinc finger domain, LSD1 subclass family
            protein; n=4; Tetrahymena thermophila SB210|Rep: Zinc
            finger domain, LSD1 subclass family protein - Tetrahymena
            thermophila SB210
          Length = 2510

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 459  YFYKYIN*NNVSSFT*IYKMSNHFNNYL--YNDQTDNTSYLN 340
            Y +KYIN NN+ S     K+   +NN++  YN Q +N++ LN
Sbjct: 2402 YKWKYINQNNIGSKK-FLKLKQIYNNHVNAYNTQNNNSAILN 2442


>UniRef50_Q6BV79 Cluster: Similar to CA2521|IPF4317 Candida
           albicans; n=1; Debaryomyces hansenii|Rep: Similar to
           CA2521|IPF4317 Candida albicans - Debaryomyces hansenii
           (Yeast) (Torulaspora hansenii)
          Length = 268

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +3

Query: 213 LSERQPLISLMG*EIK*LITYNEFPYVIT--YKSCNWNGDRRSLS--SSKKYCLFDHCRG 380
           ++ R+PL +L   E    +TYN+FP  +   Y+  N+  + +S+   +SK  C     R 
Sbjct: 142 IARRKPLSNLNINEFSGYVTYNQFPIQLNELYQPPNFQNELKSIHKFNSKLPCFVTPPRS 201

Query: 381 NY*SGLTSCKF 413
           N  +GL + K+
Sbjct: 202 NLQNGLLTSKY 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,981,327
Number of Sequences: 1657284
Number of extensions: 8975705
Number of successful extensions: 21956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21918
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)