Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0231
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0555 - 10588685-10592038                                         29   3.0  
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675...    29   3.0  
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454     28   5.3  
10_04_0010 - 7487455-7489490,7489569-7489980                           28   5.3  
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    28   5.3  
03_02_1029 - 13488535-13493037                                         28   5.3  

>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 148 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 35
           IH  S+++Y+++  ++W  +  R + EF+  C +C + KA
Sbjct: 698 IHSGSTKMYLNLKEKYWWVSMKREIAEFVALCDVCQRVKA 737


>08_02_0167 -
           13564466-13566227,13566361-13566644,13566684-13567540,
           13567684-13567957,13567973-13568218
          Length = 1140

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 148 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 35
           IH  S+++Y+ +  ++W  +  R +TEF+  C +C   KA
Sbjct: 748 IHPGSTKMYLDMKEKYWWVSMKREITEFVALCEVCQHVKA 787


>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
          Length = 674

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 148 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 35
           IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 279 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 318


>10_04_0010 - 7487455-7489490,7489569-7489980
          Length = 815

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 148 IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 35
           IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 441 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 480


>06_03_0650 +
           23157130-23157582,23157687-23157898,23157982-23158128,
           23158214-23158347,23158442-23158551,23158711-23158817,
           23159045-23159183,23159286-23159402,23159737-23159844,
           23159927-23159998,23160108-23160230,23160336-23160495,
           23160585-23160706,23160825-23160962,23161042-23161184,
           23161305-23161367,23161567-23161630,23161709-23161844,
           23162123-23162196,23162764-23162858,23162951-23162982,
           23163104-23163276
          Length = 973

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 70  QSNYVHLHSTKIERAQRYITHLNNNELNVLKKI 168
           ++NY+ + + KI   QRY   LN  ++  L K+
Sbjct: 427 KANYLPMEACKIVEGQRYTKRLNEKQITSLLKV 459


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 148  IHYYSSELYISVHVQFWSNASVRNLTEFI--CFIC*KCKA 35
            IH  S+++Y+ +  ++W  +  R + EF+  C +C + KA
Sbjct: 1081 IHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKA 1120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,931,085
Number of Sequences: 37544
Number of extensions: 209311
Number of successful extensions: 350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)