Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0231
         (626 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1778|AAM71009.1|  975|Drosophila melanogaster CG30485-P...    32   0.73 
AE014298-1977|AAF48333.2| 1103|Drosophila melanogaster CG32611-P...    29   5.1  
AY113213-1|AAM29218.1|  975|Drosophila melanogaster AT07178p pro...    29   6.8  

>AE013599-1778|AAM71009.1|  975|Drosophila melanogaster CG30485-PA
           protein.
          Length = 975

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 267 ITYNEFPYVITYKSCNW---NGDRRSLSSSKKYCLFDHCR 377
           I Y   P+    K  N+   NG ++ ++SS+K C  DHC+
Sbjct: 329 IAYENSPFYKAIKGTNYGSRNGKKKRVTSSEKKCYDDHCK 368


>AE014298-1977|AAF48333.2| 1103|Drosophila melanogaster CG32611-PB
            protein.
          Length = 1103

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 471  LLQFYFYKYIN*NNVSSFT*IYKMSNHFNNYLYNDQTDNTSYLNLNFSY 325
            LL +Y+Y Y   NN ++       +NH NN  Y   T+N      NF+Y
Sbjct: 1054 LLNYYYYYYYYYNNNNNNN--NNNNNHNNNANYLQHTNNNINNTNNFNY 1100


>AY113213-1|AAM29218.1|  975|Drosophila melanogaster AT07178p
           protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 267 ITYNEFPYVITYKSCNW---NGDRRSLSSSKKYCLFDHCR 377
           I Y   P+    K  N+   N  ++ ++SS+K C  DHC+
Sbjct: 329 IAYENSPFYKAIKGTNYGSRNEKKKRVTSSEKKCYDDHCK 368


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,002,336
Number of Sequences: 53049
Number of extensions: 402172
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)