Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0231
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047661-5|AAU05544.1|  822|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF047661-5|AAU05544.1|  822|Caenorhabditis elegans Hypothetical
           protein M70.4 protein.
          Length = 822

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +1

Query: 1   RHEIR*KKFLMKLYTFNK*SK*TQSNYVHLHSTKIERAQRYITHLNNNELNVLKKI 168
           R EI+  +   K   F +    TQ NY  L +T+ E ++ Y+THLN    N  K I
Sbjct: 693 RIEIQVDELEKKNVLFRRNRTATQQNY--LINTEFETSEEYLTHLNQLVQNTKKSI 746


>AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical
           protein K05F6.12 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -2

Query: 256 ISYPISDIKG*-RSLRINLRQCWL*LRNKIQFFLRHLIHYYSSELYISVHVQFWSNASVR 80
           +S P+ ++K   R+++I    C   L  K + F+RH   +    LY+ V      N S +
Sbjct: 25  LSLPLDNLKDVFRNMKITELTCCSLLSTKTKHFIRHFCIFKELYLYVEVDYALEYNISFQ 84

Query: 79  NLTEFIC 59
            +    C
Sbjct: 85  GVLLHSC 91


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 70  QSNYVHLHSTKIERAQRYITHLNNNELNVLKKI 168
           Q NY  L +T+ E ++ Y+THLN    N  K I
Sbjct: 549 QQNY--LINTEFETSEEYLTHLNQLVQNTKKSI 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,104
Number of Sequences: 27780
Number of extensions: 226628
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)