Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0231
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14180.1 68417.m02189 expressed protein ; expression supporte...    29   3.3  
At3g28880.1 68416.m03605 ankyrin repeat family protein contains ...    27   7.7  

>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 479 ICNCYSFIFINTLIKITCHHSPEFTRCQ 396
           + N Y    INT++ + C   P  T+CQ
Sbjct: 901 VSNSYLVSAINTVVDVACSKGPALTQCQ 928


>At3g28880.1 68416.m03605 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 762

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -2

Query: 184 LRNKIQ-FFLRHLIHYYSSELYISVHVQFWSNASVRNLTEFIC---FIC*KCKASLEISS 17
           +RN    FFLR    Y S E  +   + FW N ++     F C     C  CK  +  S+
Sbjct: 645 IRNSTSVFFLREFDFYQSYETCLKEGMCFWCNKNMIRWANFPCRHKLWCSSCKQQITQST 704

Query: 16  T 14
           +
Sbjct: 705 S 705


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,246,137
Number of Sequences: 28952
Number of extensions: 194533
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)