Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0228
(445 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P42677 Cluster: 40S ribosomal protein S27; n=74; Bilate... 117 1e-25
UniRef50_Q71UM5 Cluster: 40S ribosomal protein S27-like protein;... 117 1e-25
UniRef50_Q7RVN2 Cluster: 40S ribosomal protein S27; n=17; Fungi/... 112 4e-24
UniRef50_UPI00015B4FAB Cluster: PREDICTED: similar to myotubular... 107 1e-22
UniRef50_Q9AW40 Cluster: 40S ribosomal protein S27; n=1; Guillar... 74 2e-12
UniRef50_UPI00005A14C9 Cluster: PREDICTED: similar to ribosomal ... 65 7e-10
UniRef50_Q7R0I3 Cluster: Ribosomal protein S27; n=1; Giardia lam... 63 2e-09
UniRef50_Q6QI38 Cluster: LRRGT00170; n=2; Rattus norvegicus|Rep:... 62 5e-09
UniRef50_A2DGQ3 Cluster: Ribosomal protein S27, putative; n=4; T... 60 2e-08
UniRef50_Q8SS34 Cluster: 40S RIBOSOMAL PROTEIN S27; n=1; Encepha... 57 2e-07
UniRef50_Q8ZTY4 Cluster: 30S ribosomal protein S27e; n=10; Archa... 54 1e-06
UniRef50_Q6QI46 Cluster: LRRGT00162; n=1; Rattus norvegicus|Rep:... 54 1e-06
UniRef50_Q9YF01 Cluster: 30S ribosomal protein S27e; n=4; Thermo... 54 1e-06
UniRef50_Q3LW62 Cluster: Ribosomal protein S27; n=1; Bigelowiell... 53 3e-06
UniRef50_A0RY94 Cluster: Ribosomal protein S27E; n=1; Cenarchaeu... 47 2e-04
UniRef50_Q8TY87 Cluster: 30S ribosomal protein S27e; n=13; Archa... 47 2e-04
UniRef50_Q9HRT7 Cluster: 30S ribosomal protein S27e; n=7; Euryar... 47 2e-04
UniRef50_A7DPS1 Cluster: Ribosomal protein S27E; n=1; Candidatus... 46 5e-04
UniRef50_Q8U474 Cluster: 30S ribosomal protein S27e; n=9; Euryar... 45 8e-04
UniRef50_Q22CK0 Cluster: Putative uncharacterized protein; n=1; ... 44 0.002
UniRef50_Q5T4L4 Cluster: Ribosomal protein S27; n=30; Fungi/Meta... 42 0.006
UniRef50_Q18KR1 Cluster: Ribosomal protein S27.eR; n=3; Halobact... 42 0.008
UniRef50_Q1PS48 Cluster: Cxpwmw06; n=1; Periplaneta americana|Re... 40 0.024
UniRef50_Q9HIX2 Cluster: 30S ribosomal protein S27e; n=4; Thermo... 39 0.042
UniRef50_UPI00006C13E4 Cluster: PREDICTED: similar to ribosomal ... 38 0.074
UniRef50_A7PBG8 Cluster: Chromosome chr16 scaffold_10, whole gen... 34 1.2
>UniRef50_P42677 Cluster: 40S ribosomal protein S27; n=74;
Bilateria|Rep: 40S ribosomal protein S27 - Homo sapiens
(Human)
Length = 84
Score = 117 bits (282), Expect = 1e-25
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
LV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCST+LCQPTGG+ARLTEGCSF+
Sbjct: 24 LVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFR 80
Score = 41.9 bits (94), Expect = 0.006
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1
Query: 16 MPLAIDLLHPSPASERRKHKLKR 84
MPLA DLLHPSP E+RKHK KR
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKR 23
>UniRef50_Q71UM5 Cluster: 40S ribosomal protein S27-like protein;
n=100; Eukaryota|Rep: 40S ribosomal protein S27-like
protein - Homo sapiens (Human)
Length = 84
Score = 117 bits (282), Expect = 1e-25
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
LV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCST+LCQPTGG+ARLTEGCSF+
Sbjct: 24 LVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFR 80
Score = 36.7 bits (81), Expect = 0.22
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 16 MPLAIDLLHPSPASERRKHKLKR 84
MPLA DLLHPS E++KHK KR
Sbjct: 1 MPLARDLLHPSLEEEKKKHKKKR 23
>UniRef50_Q7RVN2 Cluster: 40S ribosomal protein S27; n=17;
Fungi/Metazoa group|Rep: 40S ribosomal protein S27 -
Neurospora crassa
Length = 82
Score = 112 bits (269), Expect = 4e-24
Identities = 46/60 (76%), Positives = 53/60 (88%)
Frame = +2
Query: 77 LSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
L LVP P S+FMDVKCPGC+ ITTVFSHAQ VV+C GC+T+LCQPTGG+ARLTEGCSF+
Sbjct: 21 LKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFR 80
Score = 40.7 bits (91), Expect = 0.014
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 16 MPLAIDLLHPSPASERRKHKLK 81
M LA+DLL+PSPASE RKHKLK
Sbjct: 1 MVLAVDLLNPSPASEARKHKLK 22
>UniRef50_UPI00015B4FAB Cluster: PREDICTED: similar to myotubularin;
n=2; Apocrita|Rep: PREDICTED: similar to myotubularin -
Nasonia vitripennis
Length = 2064
Score = 107 bits (257), Expect = 1e-22
Identities = 46/61 (75%), Positives = 50/61 (81%)
Frame = +2
Query: 77 LSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
L LV PNSYFMDVKCPGCY I T+FSHAQR V C GC TILC PTGG+ARLTEGCSF+
Sbjct: 2000 LKRLVQKPNSYFMDVKCPGCYAIKTIFSHAQRPVECDGCRTILCTPTGGKARLTEGCSFR 2059
Query: 257 E 259
+
Sbjct: 2060 K 2060
Score = 45.2 bits (102), Expect = 6e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +1
Query: 13 TMPLAIDLLHPSPASERRKHKLKR 84
+MPLA D LHPSPA E+RKHKLKR
Sbjct: 1979 SMPLAKDFLHPSPAEEKRKHKLKR 2002
>UniRef50_Q9AW40 Cluster: 40S ribosomal protein S27; n=1; Guillardia
theta|Rep: 40S ribosomal protein S27 - Guillardia theta
(Cryptomonas phi)
Length = 81
Score = 73.7 bits (173), Expect = 2e-12
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSF 253
++P+PNSYF+++ C C +FSH+Q +VC C+ LC PTGG+ARL +GC F
Sbjct: 23 IIPNPNSYFINIICKNCKNKNIIFSHSQTKIVCKNCALNLCYPTGGKARLIKGCKF 78
>UniRef50_UPI00005A14C9 Cluster: PREDICTED: similar to ribosomal
protein S27; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein S27 - Canis familiaris
Length = 115
Score = 64.9 bits (151), Expect = 7e-10
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 208
LV PNSYFMD+KCPGCYKITTVFSHAQ VV+ A T+ C
Sbjct: 23 LVQSPNSYFMDMKCPGCYKITTVFSHAQTVVLKA--QTLRC 61
Score = 32.7 bits (71), Expect = 3.7
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 16 MPLAIDLLHPSPASERRKHKLK 81
MPL DLLHPSP ++RKHK K
Sbjct: 1 MPLVKDLLHPSP-EKKRKHKKK 21
>UniRef50_Q7R0I3 Cluster: Ribosomal protein S27; n=1; Giardia
lamblia ATCC 50803|Rep: Ribosomal protein S27 - Giardia
lamblia ATCC 50803
Length = 81
Score = 63.3 bits (147), Expect = 2e-09
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +2
Query: 77 LSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLT 238
L LV PNSYF+++KC GC I V+SHA V C GC++ + PTGG+ T
Sbjct: 19 LKRLVQGPNSYFLEIKCAGCQDIVVVYSHANTPVFCPGCTSQISIPTGGKCAFT 72
Score = 34.7 bits (76), Expect = 0.91
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 28 IDLLHPSPASERRKHKLKR 84
+DLL+P P E+RKHKLKR
Sbjct: 3 VDLLYPDPVEEQRKHKLKR 21
>UniRef50_Q6QI38 Cluster: LRRGT00170; n=2; Rattus norvegicus|Rep:
LRRGT00170 - Rattus norvegicus (Rat)
Length = 496
Score = 62.1 bits (144), Expect = 5e-09
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPT 217
LV P+SYFMDVK GCYK+ +FS VV+ GCST+ CQPT
Sbjct: 211 LVQSPSSYFMDVKYLGCYKVPNIFSQEHTVVLYDGCSTVFCQPT 254
>UniRef50_A2DGQ3 Cluster: Ribosomal protein S27, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S27,
putative - Trichomonas vaginalis G3
Length = 86
Score = 60.5 bits (140), Expect = 2e-08
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTE 241
LVP+P S F+ ++CP C +TT FSH+ V C C T L PTGGR L +
Sbjct: 25 LVPNPRSEFLSLRCPSCTGLTTAFSHSNVPVFCKNCQTPLATPTGGRILLAD 76
>UniRef50_Q8SS34 Cluster: 40S RIBOSOMAL PROTEIN S27; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S27
- Encephalitozoon cuniculi
Length = 85
Score = 56.8 bits (131), Expect = 2e-07
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 47 PLRRR-GGNISLSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 223
P R + G L N +FM V+C GC T +SH+Q + C GC I+ +GG
Sbjct: 8 PTREKVGSTYKKDRLYREGNGFFMYVRCGGCRHTTCCYSHSQTNISCPGCGDIILTSSGG 67
Query: 224 RARLTEGCSFKENNINI 274
RA ++ C FK+ NI
Sbjct: 68 RAVVSPNCEFKKIIRNI 84
>UniRef50_Q8ZTY4 Cluster: 30S ribosomal protein S27e; n=10;
Archaea|Rep: 30S ribosomal protein S27e - Pyrobaculum
aerophilum
Length = 67
Score = 54.4 bits (125), Expect = 1e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 235
L+P P S F+ +CP C FSHA VV C C +L PTGG+A+L
Sbjct: 9 LIPQPKSKFIKTRCPDCGNEQITFSHAAMVVRCLVCGRVLAIPTGGKAKL 58
>UniRef50_Q6QI46 Cluster: LRRGT00162; n=1; Rattus norvegicus|Rep:
LRRGT00162 - Rattus norvegicus (Rat)
Length = 291
Score = 54.0 bits (124), Expect = 1e-06
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVV 181
LV PNSYFMDV+CPG Y+ITTVFS AQ VV+
Sbjct: 190 LVQSPNSYFMDVQCPGRYEITTVFSRAQTVVL 221
>UniRef50_Q9YF01 Cluster: 30S ribosomal protein S27e; n=4;
Thermoprotei|Rep: 30S ribosomal protein S27e - Aeropyrum
pernix
Length = 73
Score = 54.0 bits (124), Expect = 1e-06
Identities = 27/64 (42%), Positives = 35/64 (54%)
Frame = +2
Query: 44 LPLRRRGGNISLSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 223
LP+RRR L+P P S F+ V CP C VFSH+ C C +L +PTGG
Sbjct: 7 LPIRRR------KVLIPRPRSRFLLVTCPKCGNRQVVFSHSTFRARCLNCGEVLVEPTGG 60
Query: 224 RARL 235
+AR+
Sbjct: 61 KARI 64
>UniRef50_Q3LW62 Cluster: Ribosomal protein S27; n=1; Bigelowiella
natans|Rep: Ribosomal protein S27 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 93
Score = 52.8 bits (121), Expect = 3e-06
Identities = 22/65 (33%), Positives = 37/65 (56%)
Frame = +2
Query: 77 LSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
L L+ PNS+++ KC C KI +FSH+ C CST+L +P+GG+ + ++
Sbjct: 24 LKRLIQSPNSHYIATKCLKCKKINIIFSHSVFWKTCVDCSTLLTRPSGGKFKSSKSMQIV 83
Query: 257 ENNIN 271
+ +N
Sbjct: 84 KRLLN 88
>UniRef50_A0RY94 Cluster: Ribosomal protein S27E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S27E - Cenarchaeum
symbiosum
Length = 224
Score = 47.2 bits (107), Expect = 2e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +2
Query: 89 VPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 235
VP P S F+ ++C C T V+S A+ V C C +L +P GG+A L
Sbjct: 8 VPEPTSRFVKIECESCGSPTIVYSMAKSAVNCRFCGNLLAEPAGGKAVL 56
>UniRef50_Q8TY87 Cluster: 30S ribosomal protein S27e; n=13;
Archaea|Rep: 30S ribosomal protein S27e - Methanopyrus
kandleri
Length = 73
Score = 47.2 bits (107), Expect = 2e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 80 SGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 235
S LVP P S F+ V+C C +F +A V C C L +PTGG+A++
Sbjct: 13 SDLVPQPRSRFLRVECVDCGNEQIIFGNASTEVKCHICGRTLAKPTGGKAKI 64
>UniRef50_Q9HRT7 Cluster: 30S ribosomal protein S27e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S27e -
Halobacterium salinarium (Halobacterium halobium)
Length = 57
Score = 46.8 bits (106), Expect = 2e-04
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = +2
Query: 110 FMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 235
F +V+CP C TVF A V CA C T L +PTGG A L
Sbjct: 5 FYNVECPDCENEQTVFGKASTEVACAVCGTTLARPTGGEADL 46
>UniRef50_A7DPS1 Cluster: Ribosomal protein S27E; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein
S27E - Candidatus Nitrosopumilus maritimus SCM1
Length = 65
Score = 45.6 bits (103), Expect = 5e-04
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 89 VPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 235
+P P+S F V C C ++ V+SHA V C C + + TG +A++
Sbjct: 8 IPKPSSKFQKVNCNECGELQIVYSHASTQVACNSCGNAIAEATGSKAKI 56
>UniRef50_Q8U474 Cluster: 30S ribosomal protein S27e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S27e -
Pyrococcus furiosus
Length = 63
Score = 44.8 bits (101), Expect = 8e-04
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 226
++P P S F+ VKC C VFSH V C C L +PTGG+
Sbjct: 5 IIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGK 51
>UniRef50_Q22CK0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 217
Score = 43.6 bits (98), Expect = 0.002
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVV 181
L+ PNSYFMDVKC C I +FS+AQ ++
Sbjct: 22 LIQAPNSYFMDVKCAQCQNIQMIFSNAQSTII 53
Score = 39.5 bits (88), Expect = 0.032
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 191 CSTILCQPTGGRARLTEGCSFKENN 265
CS ILC+PTGG+ ++ GC+FK N
Sbjct: 193 CSAILCKPTGGKVQIQAGCAFKIKN 217
>UniRef50_Q5T4L4 Cluster: Ribosomal protein S27; n=30;
Fungi/Metazoa group|Rep: Ribosomal protein S27 - Homo
sapiens (Human)
Length = 66
Score = 41.9 bits (94), Expect = 0.006
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1
Query: 16 MPLAIDLLHPSPASERRKHKLKR 84
MPLA DLLHPSP E+RKHK KR
Sbjct: 1 MPLAKDLLHPSPEEEKRKHKKKR 23
Score = 35.5 bits (78), Expect = 0.52
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPG 133
LV PNSYFMDVKCPG
Sbjct: 24 LVQSPNSYFMDVKCPG 39
>UniRef50_Q18KR1 Cluster: Ribosomal protein S27.eR; n=3;
Halobacteriaceae|Rep: Ribosomal protein S27.eR -
Haloquadratum walsbyi (strain DSM 16790)
Length = 75
Score = 41.5 bits (93), Expect = 0.008
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 110 FMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRA 229
F ++CP C +F A VV CA C T L PTGG A
Sbjct: 5 FYQLQCPDCNNEQVIFGKASTVVNCAVCGTTLATPTGGDA 44
>UniRef50_Q1PS48 Cluster: Cxpwmw06; n=1; Periplaneta americana|Rep:
Cxpwmw06 - Periplaneta americana (American cockroach)
Length = 54
Score = 39.9 bits (89), Expect = 0.024
Identities = 15/35 (42%), Positives = 27/35 (77%)
Frame = -1
Query: 211 LTKDR*ASSADHHSLCVTKNCCNLVTARALNIHEI 107
LT+DR S +++LC+T++ C+LV RAL++H++
Sbjct: 20 LTQDRRTSCTHYYTLCMTEHRCDLVATRALHVHKV 54
>UniRef50_Q9HIX2 Cluster: 30S ribosomal protein S27e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S27e -
Thermoplasma acidophilum
Length = 65
Score = 39.1 bits (87), Expect = 0.042
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 101 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 223
N +F+ +KC C + VF+ V C C + +PTGG
Sbjct: 13 NGHFVKIKCRDCGNVQVVFARPSSTVTCNICGATIAKPTGG 53
>UniRef50_UPI00006C13E4 Cluster: PREDICTED: similar to ribosomal
protein S27; n=1; Homo sapiens|Rep: PREDICTED: similar
to ribosomal protein S27 - Homo sapiens
Length = 83
Score = 38.3 bits (85), Expect = 0.074
Identities = 22/49 (44%), Positives = 25/49 (51%)
Frame = +2
Query: 47 PLRRRGGNISLSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGC 193
PL+RR GN LV + Y MDVKC GC K V+ VV C C
Sbjct: 10 PLQRRSGN--KKRLVQSQDCYVMDVKCSGCPKAAVVWEFC--VVDCPAC 54
>UniRef50_A7PBG8 Cluster: Chromosome chr16 scaffold_10, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr16 scaffold_10, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 302
Score = 34.3 bits (75), Expect = 1.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 101 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEG 244
N++ + CP C + + ++V CAGC I+ QP G +R + G
Sbjct: 239 NNFVIKGNCPACRR--QFIGYKNQIVRCAGCGNIVWQPKGDVSRGSRG 284
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,231,125
Number of Sequences: 1657284
Number of extensions: 7268306
Number of successful extensions: 15760
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 15459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15759
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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