Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0228
         (445 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   2.3  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   2.3  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   4.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   4.0  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = +2

Query: 206 CQPTGGRARLTEGCSFK-ENNIN 271
           C   GG A +  GCS     NIN
Sbjct: 335 CAAVGGSANIMSGCSTSTSTNIN 357


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 132 AVTRLQQFLVTHREWWSALDAQRSFVN 212
           AVT +   L+ ++E WS+L+    F++
Sbjct: 31  AVTIILSSLIFNQEQWSSLNKNFQFID 57


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 178 GLRWMLNDPLSTH 216
           G R+++ND LS H
Sbjct: 134 GFRYLVNDELSAH 146


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 178 GLRWMLNDPLSTH 216
           G R+++ND LS H
Sbjct: 448 GFRYLVNDELSAH 460


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,925
Number of Sequences: 336
Number of extensions: 1852
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)