Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0228
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 107 4e-24
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 38 0.004
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 36 0.015
02_05_0029 - 25194827-25195095,25195129-25197970 30 0.73
10_01_0220 + 2365237-2366673 30 0.96
10_08_0002 - 13986969-13989338 29 2.2
12_02_0742 - 22696478-22696984 28 2.9
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 5.1
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 6.8
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35... 27 9.0
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 27 9.0
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 107 bits (257), Expect = 4e-24
Identities = 44/60 (73%), Positives = 51/60 (85%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFKENN 265
LV PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LCQPTGG+ARLTEGCSF+ +
Sbjct: 26 LVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKS 85
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKITTVFSHA 166
LV PNS+FMDVKC GC+ ++ F A
Sbjct: 26 LVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 35.9 bits (79), Expect = 0.015
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 86 LVPHPNSYFMDVKCPGCYKI 145
LV PNS+FMDVKC GC+ +
Sbjct: 26 LVQSPNSFFMDVKCQGCFSM 45
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 30.3 bits (65), Expect = 0.73
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 203 LCQPTGGRARLTEGCSFKENNINI*VLDRALFNFKIFFPIV*WSDI 340
+C+P G R ++ KE N VLDRA+++ K +V DI
Sbjct: 958 MCKPKGARELVSWVLHMKEKNCEAEVLDRAMYDKKFEMQMVQMIDI 1003
>10_01_0220 + 2365237-2366673
Length = 478
Score = 29.9 bits (64), Expect = 0.96
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 68 NISLSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTI 202
N+++ G V N+ + G Y I H QRV CA S +
Sbjct: 420 NVNVIGFVTEANAVLLYAAGRGVYTIDVETKHTQRVAACANYSHV 464
>10_08_0002 - 13986969-13989338
Length = 789
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 110 NKS*DVALGRLSLCFLLSDAGEGCNKSIASGMVTS 6
NK+ + ALG L +C ++ + CNK IA + S
Sbjct: 123 NKNVEEALGMLKICLQVTSLCQMCNKDIAEARLHS 157
>12_02_0742 - 22696478-22696984
Length = 168
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 53 RRRGGNISLSGLVPHPNSYF---MDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 223
RRRG ++ + L+PHP + C G + +H +R V A + TGG
Sbjct: 33 RRRGQQVAAAHLLPHPPTTATTGCGGVCVGSIRGQQAAAHRRRQAVAAAAGGVAVAATGG 92
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 10 VTMPLAIDLLHPSPASERRKHKLK-RPSATS*LLFHGC*VPWLLQDYNSF*SRTESGGLR 186
+T P DL + +PA++RR+HK + L P L + Y + + T GLR
Sbjct: 98 LTQPFPADLPNNAPAAQRREHKKQCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLR 157
Query: 187 WMLND 201
M D
Sbjct: 158 NMFED 162
>03_02_0238 -
6687334-6687421,6687456-6687512,6688266-6688351,
6688410-6688589
Length = 136
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 134 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 226
CYKI+ ++SH Q ++ C IL +PTG R
Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121
>12_01_0045 -
354825-355504,355602-355776,355847-355927,357266-357498,
357921-358104
Length = 450
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 368 RWIHCSELEKYHSI 327
RWIH SELE+ H+I
Sbjct: 416 RWIHHSELEEVHTI 429
>08_01_0392 -
3454224-3454325,3454926-3455035,3455496-3455609,
3455930-3456043,3456474-3456531
Length = 165
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 98 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 223
PN + C GC + ++ V CA CST+ P G
Sbjct: 18 PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 164 AQRVVVCAGCSTILCQPTGGRARLTEGCS 250
AQ +VC+GC +L P G + CS
Sbjct: 21 AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,535
Number of Sequences: 37544
Number of extensions: 211848
Number of successful extensions: 488
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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