Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0228
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.75 
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    29   1.7  
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)                         27   5.3  
SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  27   9.2  
SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  27   9.2  

>SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1022

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +2

Query: 17  CRSQLICCILPLRRRGGNISLSGLVP----HPNSYFMDVKCPGCYKITTVFSHAQRVVVC 184
           C++     +  +     N S++ L+P    H N+   D+KC  C       +  Q +  C
Sbjct: 445 CQADFQMSVKDVENLSQNFSINNLMPILAIHSNASRKDLKCENCN------NKKQAIARC 498

Query: 185 AGCSTILC 208
           A CS  LC
Sbjct: 499 AHCSVFLC 506


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 92  PHPNSYFMDVKCPGCYKITTVFSHAQRV 175
           P P     ++K P  Y++TT+ +H+ RV
Sbjct: 432 PKPGERATEIKSPSTYQVTTMVTHSPRV 459


>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 122 KCPGCYKITTVFSHAQRVVVCAGC 193
           +CP CY ++ V  + Q V  C+ C
Sbjct: 208 RCPRCYPMSKVLPNVQGVTQCSRC 231


>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1444

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
 Frame = +2

Query: 44  LPLRRRGGNISLSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGC-STILCQPTG 220
           L  RR  G + +  LV H N        P C          Q+  VCA C  T   + T 
Sbjct: 202 LGTRRMAGMLHMGSLVDHRNKASRRAPAPVCPVCDKAVKCNQKRYVCATCKDTTHARWTC 261

Query: 221 GRARLTEGCSFKENNIN 271
               L+E   F + ++N
Sbjct: 262 SNCLLSEMPFFGQRSLN 278


>SB_43848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 28/97 (28%), Positives = 43/97 (44%)
 Frame = +2

Query: 74  SLSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSF 253
           S SGL  H    F+ + C  C  I  + S+ + V + +GC  I+  PT  R R+    S 
Sbjct: 154 SSSGLSSHHRVVFL-LSC--CLPIIGLSSYHRAVFLSSGCLPIIGYPTSHR-RVVFPSSG 209

Query: 254 KENNINI*VLDRALFNFKIFFPIV*WSDIFQVHYNGS 364
               I +    RA+F+     PI+  S   +V +  S
Sbjct: 210 CLPIIGLSSYHRAVFSSSGCLPIIGLSSYHRVVFPSS 246


>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 517

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  HILTLISWMLSALAVTRLQQFLVTHREWWSALD 191
           H  T + W+L ++  +   Q  + +R+W SA D
Sbjct: 473 HQATAVWWVLPSVLYSNRAQCYINNRDWQSAAD 505


>SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 158

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  HILTLISWMLSALAVTRLQQFLVTHREWWSALD 191
           H  T + W+L ++  +   Q  + +R+W SA D
Sbjct: 114 HQATAVWWVLPSVLYSNRAQCYINNRDWQSAAD 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,648,760
Number of Sequences: 59808
Number of extensions: 235963
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)