Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0228
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   109   1e-24
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    28   3.5  
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    27   4.6  
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    27   4.6  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  109 bits (261), Expect = 1e-24
 Identities = 45/61 (73%), Positives = 53/61 (86%)
 Frame = +2

Query: 77  LSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
           L  LV HPNSYFMDVKC GC+KI+TVFSHA  VVVC GC+T+LCQPT G+A+LTEGCSF+
Sbjct: 21  LKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFR 80

Query: 257 E 259
           +
Sbjct: 81  K 81



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +1

Query: 16 MPLAIDLLHPSPASERRKHKLKR 84
          MPLA+DLLHP P  E R HKLKR
Sbjct: 1  MPLAVDLLHPEPQREIRCHKLKR 23


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 128 PGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 226
           P CY+  +VFS   R   C  C  I C     R
Sbjct: 161 PECYRCRSVFSVFTRKHHCRACGQIFCDKCSSR 193


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 116 DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 208
           D +CP C    T F+   R   C  C  +LC
Sbjct: 541 DSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 116 DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 208
           D +CP C    T F+   R   C  C  +LC
Sbjct: 541 DSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,342,652
Number of Sequences: 27780
Number of extensions: 174403
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)