Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0228
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   105   2e-23
At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           103   4e-23
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           101   3e-22
At2g44870.1 68415.m05586 expressed protein                             30   0.61 
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    26   10.0 

>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  105 bits (251), Expect = 2e-23
 Identities = 44/60 (73%), Positives = 50/60 (83%)
 Frame = +2

Query: 77  LSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
           L  LV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILCQPTGG+A+LTEGCSF+
Sbjct: 23  LKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFR 82



 Score = 30.3 bits (65), Expect = 0.61
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 28 IDLLHPSPASERRKHKLKR 84
          IDLL+P    E+RKHKLKR
Sbjct: 7  IDLLNPPAELEKRKHKLKR 25


>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  103 bits (248), Expect = 4e-23
 Identities = 43/61 (70%), Positives = 50/61 (81%)
 Frame = +2

Query: 77  LSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
           L  LV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LCQPTGG+ARL EGCSF+
Sbjct: 23  LKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFR 82

Query: 257 E 259
           +
Sbjct: 83  K 83



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +1

Query: 28 IDLLHPSPASERRKHKLKR 84
          IDLLHP P  E+RKHKLKR
Sbjct: 7  IDLLHPPPELEKRKHKLKR 25


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  101 bits (241), Expect = 3e-22
 Identities = 41/61 (67%), Positives = 50/61 (81%)
 Frame = +2

Query: 77  LSGLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFK 256
           L  LV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC PTGG+A+LTEGCSF+
Sbjct: 23  LKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFR 82

Query: 257 E 259
           +
Sbjct: 83  K 83



 Score = 30.3 bits (65), Expect = 0.61
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 28 IDLLHPSPASERRKHKLKR 84
          IDLL+P    E+RKHKLKR
Sbjct: 7  IDLLNPPAELEKRKHKLKR 25


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 101 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 220
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 41  ILPLRRRGGNISLSGLVPHPNSYFMDVKCPGCYKI-TTVFS 160
           +L L   G  +   GL  HPN  +    CP   +I +TVFS
Sbjct: 46  LLRLSSGGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFS 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,910,890
Number of Sequences: 28952
Number of extensions: 164197
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)