Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0227
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...    99   1e-19
UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    38   0.23 
UniRef50_Q2FUU4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_A1Z9D9 Cluster: CG6016-PA, isoform A; n=5; Diptera|Rep:...    33   6.6  

>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score = 98.7 bits (235), Expect = 1e-19
 Identities = 51/81 (62%), Positives = 54/81 (66%)
 Frame = +2

Query: 425 VRWHFSGKCARNPYLFIFLNTFKYVSAHRQ*P**MLQ*Y*KRKSMSIQHFPCRPYSLFCG 604
           VRWHFSGKCARNPYLFIFLNTFKYVSAH            K++      FPCRPYSLFCG
Sbjct: 22  VRWHFSGKCARNPYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCG 81

Query: 605 IFGLSCFLLHPENAG*KVKRC 667
           I   SCF   P NAG + KRC
Sbjct: 82  ILP-SCF-CSPRNAG-ESKRC 99


>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -3

Query: 427 DAPCSGALSAAGVVVTR 377
           DAPCSGALSAAGVVVTR
Sbjct: 2   DAPCSGALSAAGVVVTR 18



 Score = 34.7 bits (76), Expect = 2.2
 Identities = 17/28 (60%), Positives = 17/28 (60%)
 Frame = -2

Query: 296 GFPRQALNRGLPLGSDLVLYGTSTPKNL 213
           GFPRQALNRGLPLG          PK L
Sbjct: 45  GFPRQALNRGLPLGFRFSALRHLDPKKL 72


>UniRef50_Q2FUU4 Cluster: Putative uncharacterized protein; n=1;
           Staphylococcus aureus subsp. aureus NCTC 8325|Rep:
           Putative uncharacterized protein - Staphylococcus aureus
           (strain NCTC 8325)
          Length = 79

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +1

Query: 466 FVYFSKYIQICIRS*TITLINASIILKKEEYEYSTFSVSPLFPFLRHFWPFLFFAS 633
           F++ ++YI  CI S     +  ++IL     ++++ + SP FPF+   + F++F++
Sbjct: 3   FLFQARYI--CIYSINTKNVKTTMILIGSNDKHNSLAFSPFFPFITSLYRFIYFST 56


>UniRef50_A1Z9D9 Cluster: CG6016-PA, isoform A; n=5; Diptera|Rep:
           CG6016-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 417

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 520 LINASIILKKEEYEYSTFSVSPLFPFLRHFWPFLFFASP 636
           +++A  + K  E++YS FSVS L P L+ +W +L   +P
Sbjct: 11  ILSAQQLRKLSEHKYSCFSVSLLDPLLQPWWNWLVAQTP 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,574,168
Number of Sequences: 1657284
Number of extensions: 12765524
Number of successful extensions: 30908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30900
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)