Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0227
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    31   1.1  
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     30   1.5  
08_02_0934 + 22747742-22748644                                         29   4.6  
04_04_1586 - 34621945-34623366                                         28   6.1  

>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 384  LRASVTRYTCQRPSA-RSFRFLPFLSRHVRRLSPSSSK 274
            +   V  Y CQ P   ++FRF+   SRH R+   SS K
Sbjct: 1306 VHTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343


>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 351 RPSARSFRFLPFLSRHVRRLSPSSSKSGAP 262
           R SA   R+ PFLSR  +R S  S+ SG P
Sbjct: 191 RRSATDGRYAPFLSRQPQRSSAGSTHSGKP 220


>08_02_0934 + 22747742-22748644
          Length = 300

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 375 SVTRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKSGA 265
           SV R    +P+  SF  LPF+ +  R   PSSS  G+
Sbjct: 2   SVERDGRDQPNIDSFSQLPFIRQAAREKPPSSSSGGS 38


>04_04_1586 - 34621945-34623366
          Length = 473

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 173 YQGDGPLREPSP*SSFLGSRCRKALNRTLKG 265
           Y    PL +P+  SSF G  C  A+ RTL G
Sbjct: 165 YAQTDPLFDPAASSSFSGVSCGSAICRTLSG 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,019
Number of Sequences: 37544
Number of extensions: 342730
Number of successful extensions: 875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)