Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0227
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    28   5.5  
U80955-7|AAG01555.1|  116|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U39855-3|AAA81082.1|  467|Caenorhabditis elegans Patterned expre...    28   7.2  

>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 538 ILKKEEYEYSTFSVSPLFPFLRHFWPFLFFASPRKRWVK 654
           +LK    EYS FSV+ L P L     +L+F  P ++ VK
Sbjct: 261 LLKSPILEYSIFSVAILMPALSPI-TYLYFVRPYRQKVK 298


>U80955-7|AAG01555.1|  116|Caenorhabditis elegans Hypothetical
           protein T04C9.2 protein.
          Length = 116

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 429 LTRPVAAH*ARRVWWLRASVTRYTCQRPSARSFRFLPFLSRHVRRLSPS 283
           L  P+  H  RR+   R + +R  C+RP   S R     SR      PS
Sbjct: 17  LVLPIYTHSPRRIVLFRIAASRCRCRRPPFLSIRIGSTSSRRQESSLPS 65


>U39855-3|AAA81082.1|  467|Caenorhabditis elegans Patterned
           expression site protein 8 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +1

Query: 541 LKKEEYEYSTFSVS-PL-FPFLRHFWPFLF 624
           ++ +EY ++T++ S P+ +P+  H WP +F
Sbjct: 425 MRGDEYHHATYTHSLPIPYPYFAHHWPAIF 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,953,255
Number of Sequences: 27780
Number of extensions: 302542
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)