Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0226
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   2.4  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.6  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   7.5  

>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 249 MKLPSDYGPSTNMCHNSNSSS 187
           + +PS YG  +N+  NSNSSS
Sbjct: 315 LNMPSTYGIDSNLYTNSNSSS 335


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = -2

Query: 209 AITLIAALSTMHVF------LLRRNDIFRPSNYLFYLR 114
           A+ L+A+L T  +F       LR+N I R   Y+F+LR
Sbjct: 171 AMQLVASLETFLLFRLFFGVFLRKNSISRLVGYIFFLR 208


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 280 YYKKLLYPSNHEATIRLRTIDEHVP 206
           YYK  L P  HE+   L  I +H P
Sbjct: 115 YYKTCLDPYRHESVKILNIIKKHAP 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,639
Number of Sequences: 5004
Number of extensions: 56420
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)