Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0226
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81544-8|CAB04433.3|  399|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical...    28   5.2  
AF003142-6|AAK73887.1|  653|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF003142-4|AAK73888.1|  856|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z81544-8|CAB04433.3|  399|Caenorhabditis elegans Hypothetical
           protein F49C5.4 protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 461 IFEELTRVHVALVLFALGPICTITLF*DRLVEGSAQPVIVNIGRLVS 321
           + E LTRVH+ +   + G + T      +L EG A+P+   I   VS
Sbjct: 98  VVETLTRVHLVIEYASGGELYTYVHERGKLTEGDAKPLFAQIVSAVS 144


>AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25a protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 471 ARPNCFNLSGYHTRDLLKFLGFFYIIWGLPSI 566
           A   CF +      D+++ L   YI+W LP +
Sbjct: 86  ALATCFEIHSEERDDVIRRLNIIYIVWRLPDL 117


>AF003142-6|AAK73887.1|  653|Caenorhabditis elegans Hypothetical
           protein F57C9.4a protein.
          Length = 653

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -1

Query: 258 RQIMKLPSDYGPSTNMCHNSNSSSFNHARVFATSE*YFSAV*LSLLSPT-----LRSEPT 94
           R  + LP DY PS ++    NSS+   A        ++  V  ++L+P          P+
Sbjct: 424 RSYVTLPVDYFPSIDLTEAYNSSNLFGADATMQLTNFYQTVLKNVLNPVYMIWIYTYRPS 483

Query: 93  TIKNYSRHYI 64
           T++   +H++
Sbjct: 484 TVRTCDKHFV 493


>AF003142-4|AAK73888.1|  856|Caenorhabditis elegans Hypothetical
           protein F57C9.4b protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -1

Query: 258 RQIMKLPSDYGPSTNMCHNSNSSSFNHARVFATSE*YFSAV*LSLLSPT-----LRSEPT 94
           R  + LP DY PS ++    NSS+   A        ++  V  ++L+P          P+
Sbjct: 424 RSYVTLPVDYFPSIDLTEAYNSSNLFGADATMQLTNFYQTVLKNVLNPVYMIWIYTYRPS 483

Query: 93  TIKNYSRHYI 64
           T++   +H++
Sbjct: 484 TVRTCDKHFV 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,297,021
Number of Sequences: 27780
Number of extensions: 316855
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)