Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0225
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    89   7e-17
UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus...    47   5e-04
UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal ...    44   0.003
UniRef50_UPI0000499B39 Cluster: hypothetical protein 6.t00031; n...    34   2.6  
UniRef50_Q55D88 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 89.4 bits (212), Expect = 7e-17
 Identities = 53/90 (58%), Positives = 60/90 (66%)
 Frame = +1

Query: 355 SKLKIAS*PKKTGIKGQKKVVKPVTKALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*N 534
           +KLKIA  PKKTGIKGQKKVVKPV KALK Q+KVVKGEHGKRVRKI     FRR +    
Sbjct: 129 AKLKIAPKPKKTGIKGQKKVVKPVVKALKIQKKVVKGEHGKRVRKIRTSVHFRRPKTF-E 187

Query: 535 LPRAP*ITQGSLLALREIAWDGYNIPLNFP 624
            PR P   + SL     +  D YNI + +P
Sbjct: 188 PPRNPKYPRKSLPKRNRM--DAYNI-IKYP 214


>UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus
           cervinus|Rep: Ribosomal protein L23Ae - Dascillus
           cervinus
          Length = 212

 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 31/76 (40%), Positives = 39/76 (51%)
 Frame = +1

Query: 397 KGQKKVVKPVTKALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLA 576
           KG  KV KPV KAL  Q+KV+KG  G R RKI     F R +     PR P   + S+  
Sbjct: 133 KGVGKVAKPVQKALNVQKKVIKGPFGTRARKIRNSVHFHRPKTF-RPPRNPKYPRKSVPT 191

Query: 577 LREIAWDGYNIPLNFP 624
              +  D YNI + +P
Sbjct: 192 RSRM--DAYNI-IKYP 204


>UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal
           protein L23Ae; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to ribosomal protein L23Ae - Nasonia vitripennis
          Length = 247

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
 Frame = +1

Query: 370 AS*PKKTGIKGQKKVVK------PVTKALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV* 531
           A+ PKK  ++ QKK  K      PV KALKAQ+K++KG  G RVRKI     F R +   
Sbjct: 86  AAKPKKN-VQAQKKTPKGGKAAQPVQKALKAQKKILKGVQGSRVRKIRTSVHFHRPKTF- 143

Query: 532 NLPRAP 549
             PR P
Sbjct: 144 RPPRNP 149


>UniRef50_UPI0000499B39 Cluster: hypothetical protein 6.t00031; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 6.t00031 - Entamoeba histolytica HM-1:IMSS
          Length = 530

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +1

Query: 382 KKTGIKGQKKVVKPVTKALKAQRKVVKGEHGKRVRKISQL 501
           KK   K QKK  K V KA K Q+K+VK +      K++QL
Sbjct: 132 KKEVKKDQKKAKKYVKKAEKIQKKIVKAQEKGNTEKVTQL 171


>UniRef50_Q55D88 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 227

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 552 LGCPRKVSNVLGSAECTELRNFPYSLPMFTFYNLPLS-LKCFSNRFHYFFLSLNPSL 385
           L C +++S  + S    +  NF   L  F FYN  +S L C+++ + YF+  LN  L
Sbjct: 9   LECAKEISEHVSSKHVIDKENFDM-LETFLFYNDIISQLNCWNSSYPYFYSKLNDHL 64


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,238,644
Number of Sequences: 1657284
Number of extensions: 6593390
Number of successful extensions: 16437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16430
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)