Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0225
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    30   0.34 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    30   0.34 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   1.8  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   9.5  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   9.5  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   9.5  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   9.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 424 VTKALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP 549
           V KA  AQ+ V KG H K  RK+     FRR + +  L R P
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTL-ELARKP 43


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +1

Query: 424 VTKALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLALREIAWDGY 603
           V KA  AQ+ V KG H K  +K+     FRR + +  L R P   + S+     +  D Y
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTL-QLSRKPKYARKSVAHAPRL--DEY 59

Query: 604 NIPLN 618
            I +N
Sbjct: 60  KIIVN 64


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 464 VNMGREYGKFRNSVHSAEPKTFETFLGHPKLPKEVFW 574
           V+  R Y + RN V S E + +  F G   LP  +FW
Sbjct: 390 VHYNRVYTR-RNGVMSPEDRLYPLFFGSIMLPISMFW 425


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 346 AWVWQFWLLL 317
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 585 FS*GQKTSLGNLGCPRKVSNVLGSAECTELRNFP 484
           FS    T+ GNLG P K  +V  S    + R FP
Sbjct: 307 FSMNTFTATGNLGRPTKSPSVPTSVGSNKSRKFP 340


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 346 AWVWQFWLLL 317
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 555 YPRKSSGLKRNRMGWLQHSFKFPFSTS 635
           + R +S  KRN   W++H +K P  T+
Sbjct: 233 WKRINSEEKRNWEEWIKHKYKIPNDTN 259


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = -1

Query: 524  SWVLRNAQSCEIFRTLFPCSP--FTTFL*ALSALVTGFTTFFCPLIPVFL 381
            SW  R  QSC       PC    F     AL  L+ GF   F  +   FL
Sbjct: 2092 SWTERRLQSCSQIEVTLPCVECFFKYKKDALHTLLPGFMRCFHKVAKEFL 2141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,795
Number of Sequences: 5004
Number of extensions: 29319
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)