Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0225
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753     29   2.4  
07_01_0885 + 7353926-7354770,7354845-7355487                           29   3.2  
08_02_0397 + 16664990-16665874,16665961-16666005                       28   5.6  

>12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753
          Length = 375

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 546 TLNYPRKSSGLKRNRMGWLQHSFKFPFSTSEAGH 647
           +L Y R S+G K  +  W+ H F+ P S S++ H
Sbjct: 166 SLVYYRGSAG-KGTKTDWMMHEFRLPSSISDSDH 198


>07_01_0885 + 7353926-7354770,7354845-7355487
          Length = 495

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 527 TSWVLRNAQSCEIFRTLFPCSPFTTFL*ALSALVTGFTTFFCPLIPVFLGYDA 369
           T+W++   +S        P SPFT F  A+SA+       +CP++ + + + A
Sbjct: 191 TNWIIETRRSGGT-----PVSPFTVFSYAVSAIRLWKVELYCPVVAMIMEHPA 238


>08_02_0397 + 16664990-16665874,16665961-16666005
          Length = 309

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 649 QWPASDVEKGNLKECCSH 596
           QW +SD+ +GNLKE  +H
Sbjct: 11  QWASSDMTEGNLKEMVAH 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,556
Number of Sequences: 37544
Number of extensions: 183263
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)