Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0225
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              29   4.4  
SB_56273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                28   5.8  

>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 312 CGNSSQNCQTQASSFQIEDCIVAQKDWD*GTKKSSETCY*ST*GSEEGCK 461
           CGN + NC  +A +   E       DW       +ETC      SEE C+
Sbjct: 129 CGNGTSNCNCEACTDFSEVISAELYDW----VPQNETCVVKNYSSEEACR 174


>SB_56273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 369 CIVAQKDWD*GTKKSSETCY*ST*GS 446
           CI+  KD+D G  K  + CY +T GS
Sbjct: 536 CIIDHKDYDYGHDKYDDCCYRNTDGS 561


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/62 (37%), Positives = 27/62 (43%)
 Frame = -3

Query: 525 VLGSAECTELRNFPYSLPMFTFYNLPLSLKCFSNRFHYFFLSLNPSLFGLRCNLQFGNCW 346
           VLG   C E  NF   L +FTF     SL C   R  Y       + FGL+    +G CW
Sbjct: 238 VLGQENCYETANFCPLLSIFTF-----SLACRCARAAY---KKGYTYFGLQF---YGECW 286

Query: 345 LG 340
            G
Sbjct: 287 SG 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,774
Number of Sequences: 59808
Number of extensions: 205983
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)