Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0225
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37230-1|AAB17510.1|  156|Homo sapiens ribosomal protein L23a pr...    34   0.51 
U43701-1|AAB03210.1|  156|Homo sapiens ribosomal protein L23a pr...    31   2.7  
U02032-1|AAA03341.1|  156|Homo sapiens ribosomal protein L23a pr...    31   2.7  
L13799-1|AAA35681.1|  147|Homo sapiens protein ( Homo sapiens (c...    31   2.7  
BC058041-1|AAH58041.1|  156|Homo sapiens ribosomal protein L23a ...    31   2.7  
BC014459-1|AAH14459.1|  156|Homo sapiens ribosomal protein L23a ...    31   2.7  
AF001689-1|AAC51934.1|  156|Homo sapiens ribosomal protein L23A ...    31   2.7  
BC098172-1|AAH98172.1|  130|Homo sapiens RPL23AP13 protein protein.    31   3.6  
BC096740-1|AAH96740.1|  130|Homo sapiens RPL23AP13 protein protein.    31   3.6  
BC096706-1|AAH96706.1|  130|Homo sapiens RPL23AP13 protein protein.    31   3.6  
AC092839-2|AAX93105.1|  130|Homo sapiens unknown protein.              31   3.6  

>U37230-1|AAB17510.1|  156|Homo sapiens ribosomal protein L23a
           protein.
          Length = 156

 Score = 33.9 bits (74), Expect = 0.51
 Identities = 26/65 (40%), Positives = 35/65 (53%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLALREIAWDGYNI 609
           KALKA++ V+KG H  + +KI     FRR + +  L R P   + S  A R    D Y I
Sbjct: 20  KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTL-RLRRQPKYPRKS--APRRNKLDHYAI 76

Query: 610 PLNFP 624
            +NFP
Sbjct: 77  -INFP 80


>U43701-1|AAB03210.1|  156|Homo sapiens ribosomal protein L23a
           protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLALREIAWDGYNI 609
           KALKA++ V+KG H  + +KI     FRR + +  L R P   + S  A R    D Y I
Sbjct: 20  KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTL-RLRRQPKYPRKS--APRRNKLDHYAI 76

Query: 610 PLNFP 624
            + FP
Sbjct: 77  -IKFP 80


>U02032-1|AAA03341.1|  156|Homo sapiens ribosomal protein L23a
           protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLALREIAWDGYNI 609
           KALKA++ V+KG H  + +KI     FRR + +  L R P   + S  A R    D Y I
Sbjct: 20  KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTL-RLRRQPKYPRKS--APRRNKLDHYAI 76

Query: 610 PLNFP 624
            + FP
Sbjct: 77  -IKFP 80


>L13799-1|AAA35681.1|  147|Homo sapiens protein ( Homo sapiens
           (clone 01) liver expressed protein mRNA, 3'end. ).
          Length = 147

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLALREIAWDGYNI 609
           KALKA++ V+KG H  + +KI     FRR + +  L R P   + S  A R    D Y I
Sbjct: 11  KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTL-RLRRQPKYPRKS--APRRNKLDHYAI 67

Query: 610 PLNFP 624
            + FP
Sbjct: 68  -IKFP 71


>BC058041-1|AAH58041.1|  156|Homo sapiens ribosomal protein L23a
           protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLALREIAWDGYNI 609
           KALKA++ V+KG H  + +KI     FRR + +  L R P   + S  A R    D Y I
Sbjct: 20  KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTL-RLRRQPKYPRKS--APRRNKLDHYAI 76

Query: 610 PLNFP 624
            + FP
Sbjct: 77  -IKFP 80


>BC014459-1|AAH14459.1|  156|Homo sapiens ribosomal protein L23a
           protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLALREIAWDGYNI 609
           KALKA++ V+KG H  + +KI     FRR + +  L R P   + S  A R    D Y I
Sbjct: 20  KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTL-RLRRQPKYPRKS--APRRNKLDHYAI 76

Query: 610 PLNFP 624
            + FP
Sbjct: 77  -IKFP 80


>AF001689-1|AAC51934.1|  156|Homo sapiens ribosomal protein L23A
           protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV*NLPRAP*ITQGSLLALREIAWDGYNI 609
           KALKA++ V+KG H  + +KI     FRR + +  L R P   + S  A R    D Y I
Sbjct: 20  KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTL-RLRRQPKYPRKS--APRRNKLDHYAI 76

Query: 610 PLNFP 624
            + FP
Sbjct: 77  -IKFP 80


>BC098172-1|AAH98172.1|  130|Homo sapiens RPL23AP13 protein protein.
          Length = 130

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRR 516
           KALKA++ V+KG HG + +KI     F+R
Sbjct: 20  KALKAKKVVLKGVHGHKKKKIRMSPTFQR 48


>BC096740-1|AAH96740.1|  130|Homo sapiens RPL23AP13 protein protein.
          Length = 130

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRR 516
           KALKA++ V+KG HG + +KI     F+R
Sbjct: 20  KALKAKKVVLKGVHGHKKKKIRMSPTFQR 48


>BC096706-1|AAH96706.1|  130|Homo sapiens RPL23AP13 protein protein.
          Length = 130

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRR 516
           KALKA++ V+KG HG + +KI     F+R
Sbjct: 20  KALKAKKVVLKGVHGHKKKKIRMSPTFQR 48


>AC092839-2|AAX93105.1|  130|Homo sapiens unknown protein.
          Length = 130

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 430 KALKAQRKVVKGEHGKRVRKISQLCAFRR 516
           KALKA++ V+KG HG + +KI     F+R
Sbjct: 20  KALKAKKVVLKGVHGHKKKKIRMSPTFQR 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,499,951
Number of Sequences: 237096
Number of extensions: 1079240
Number of successful extensions: 2114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2114
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)