Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0225
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosom...    38   0.016
BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p pro...    38   0.016
AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA ...    38   0.016
BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p pro...    31   1.8  
AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA...    31   1.8  

>DQ450529-1|ABE27283.1|  277|Drosophila melanogaster L23A ribosomal
           protein naturalvariant protein.
          Length = 277

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +1

Query: 355 SKLKIAS*PKKTGIKGQKKV-VKPVTKALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV* 531
           +K K    P     KG  K     +  A K Q+K++KG  G R RKI     FRR   + 
Sbjct: 115 AKAKKGVKPVTKPAKGTAKAKAVALLNAKKVQKKIIKGAFGTRARKIRANVHFRRPTTL- 173

Query: 532 NLPRAP*ITQGSLLALREIAWDGYNIPLNFP 624
            LPR+P   + S+     +  D YNI + +P
Sbjct: 174 KLPRSPKYPRKSVPTRNRM--DAYNI-IKYP 201


>BT029645-1|ABL75704.1|  269|Drosophila melanogaster IP17216p
           protein.
          Length = 269

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +1

Query: 355 SKLKIAS*PKKTGIKGQKKV-VKPVTKALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV* 531
           +K K    P     KG  K     +  A K Q+K++KG  G R RKI     FRR   + 
Sbjct: 107 AKAKKGVKPVTKPAKGTAKAKAVALLNAKKVQKKIIKGAFGTRARKIRTNVHFRRPTTL- 165

Query: 532 NLPRAP*ITQGSLLALREIAWDGYNIPLNFP 624
            LPR+P   + S+     +  D YNI + +P
Sbjct: 166 KLPRSPKYPRKSVPTRNRM--DAYNI-IKYP 193


>AE014296-329|AAF47545.1|  277|Drosophila melanogaster CG7977-PA
           protein.
          Length = 277

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +1

Query: 355 SKLKIAS*PKKTGIKGQKKV-VKPVTKALKAQRKVVKGEHGKRVRKISQLCAFRRTQDV* 531
           +K K    P     KG  K     +  A K Q+K++KG  G R RKI     FRR   + 
Sbjct: 115 AKAKKGVKPVTKPAKGTAKAKAVALLNAKKVQKKIIKGAFGTRARKIRTNVHFRRPTTL- 173

Query: 532 NLPRAP*ITQGSLLALREIAWDGYNIPLNFP 624
            LPR+P   + S+     +  D YNI + +P
Sbjct: 174 KLPRSPKYPRKSVPTRNRM--DAYNI-IKYP 201


>BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p
           protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 471 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 379
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


>AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA
           protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 471 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 379
           M+  Y+ P  LK  +NR H+F L+L   + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,042,212
Number of Sequences: 53049
Number of extensions: 313978
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)