Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0225
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    27   8.8  

>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 483  YSLPMFTFYNLPLSLKCFSNRFHYFF 406
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 591 CDFS*GQKTSLGNLG-CPRKVSNVLGSAECTELRNFPYSLPMFTF 460
           CD +     +L N G CP      LGS  C ++ +  YS  M+ +
Sbjct: 370 CDTAAVMAATLANGGICPLTTEKCLGSRPCRDILSLMYSCGMYDY 414


>U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical
           protein F41H10.4 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 358 KLKIAS*PKKTGIKGQKKVVKPVTKALKAQRK 453
           KLK A   KK  +K    +VK + K+LK +RK
Sbjct: 371 KLKSAEEDKKLAVKKAMSLVKELQKSLKEERK 402


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 418 KPVTKALKAQRKVV--KGEHGKRVRKISQLCAF 510
           K +TK +   RKV+  KG +GKRV    Q+C F
Sbjct: 258 KVITKCINKHRKVIKTKGANGKRVS--PQVCTF 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,327,941
Number of Sequences: 27780
Number of extensions: 164741
Number of successful extensions: 427
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)