Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0225
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43690.1 68418.m05340 sulfotransferase family protein similar...    28   4.7  
At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, pu...    27   8.2  

>At5g43690.1 68418.m05340 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 331

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 570 SGLKRNRMG--WLQHSFKFPFSTSEAGHWK 653
           SGL+ N+ G  W+ + +K  F   E G WK
Sbjct: 276 SGLEVNKTGKTWMNYDYKSYFRKGEVGDWK 305


>At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase TCH4 GI:886116 from
           [Arabidopsis thaliana]
          Length = 277

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 471 WEESTENFATLCIPQNPRRL 530
           W + T NF T CI  NP+R+
Sbjct: 134 WFDPTANFHTYCITWNPQRI 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,998,247
Number of Sequences: 28952
Number of extensions: 156867
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)