Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0224
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    25   0.53 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   0.92 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.5  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 157 GVNRLYIFLGLVAFTGLYLVFGFGAELICN 246
           GV ++YIF G +  +G+    G+    IC+
Sbjct: 86  GVVQIYIFSGFIVPSGVVYKIGYWLHQICH 115


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 61  SKLQEYKDNIEQSLNDKSK 117
           SKLQ+  DNIE  L+D ++
Sbjct: 118 SKLQQLVDNIEHKLSDPNQ 136


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 421 MHFNSQYNGNQPTMKSEKYSTIEKQAYTTQY 329
           MHF +QY  NQ      K++    Q     Y
Sbjct: 282 MHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 312


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 421 MHFNSQYNGNQPTMKSEKYSTIEKQAYTTQY 329
           MHF +QY  NQ      K++    Q     Y
Sbjct: 230 MHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 260


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 421 MHFNSQYNGNQPTMKSEKYSTIEKQAYTTQY 329
           MHF +QY  NQ      K++    Q     Y
Sbjct: 413 MHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 443


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,818
Number of Sequences: 336
Number of extensions: 4002
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)