Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0224
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 100 2e-22
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 44 2e-05
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 29 0.74
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 2.3
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 26 4.0
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 26 5.2
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 5.2
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 6.9
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 6.9
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 9.1
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 9.1
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 100 bits (239), Expect = 2e-22
Identities = 43/113 (38%), Positives = 71/113 (62%)
Frame = +3
Query: 177 FLRLGRVHRFIFSVRFRS*INMQLDRFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFS 356
FL ++ + + + L F PA+ S+ A+E+ K DDT+WLTY++V + +
Sbjct: 39 FLTAAGIYALFLFLNWGGFLLTNLLAFAMPAFFSINAIETTNKADDTQWLTYYLVTSFLN 98
Query: 357 IVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHMV 515
++EY+S I+ + P+YWLLK IF+IW LP ++NG+ +IY +IRPY H++
Sbjct: 99 VIEYWSQLILYYVPVYWLLKAIFLIWLALP-KFNGATIIYRHLIRPYITPHVI 150
Score = 31.9 bits (69), Expect = 0.080
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 76 YKDNIEQSLNDKSKPWTKYFEL--AEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNS 249
++ ++Q++ D + +L E+ GV++LY+FL L+L +G L+ N
Sbjct: 3 FQVRVKQNMQDLDNRLAAFPQLNSLEKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNL 62
Query: 250 IGSCTP 267
+ P
Sbjct: 63 LAFAMP 68
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 303 KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYR 482
+++ + + YW VY C + E + W P Y K +F +W P G+ IY
Sbjct: 97 EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIYAS 155
Query: 483 IIRPYYQKH 509
I P+ H
Sbjct: 156 YISPFLSDH 164
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 0.74
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 230 APKPNTKYKPVNATKPKKMYNLFTPTFCSASS 135
A K +KYKP+N KP + + PT S S+
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSA 541
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 473 LLPYHSSLLPEAHGRI 520
+L YH L+PEAHG I
Sbjct: 483 VLQYHLGLIPEAHGNI 498
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 97 SLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVF 219
+++ K+K TKY ++ N ++I+LG+ FT + LV+
Sbjct: 307 NMSYKAKLSTKYVFRVLAQLSENFIFIYLGMSLFTQVDLVY 347
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 31 G*PLKDRTMASKLQEYKDNIEQSLNDKSKPW 123
G P + + L EYK E+S+ND S W
Sbjct: 20 GDPTVPKPNIASLDEYKRMYEESINDPSTFW 50
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 348 CFSIVEYFSDFIVGWFPLYWLLKC 419
C ++EYF F + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 61 SKLQEYKDNIEQSLNDKSKPWTKYFE 138
+++ E D I++ LNDK K W F+
Sbjct: 53 NEMLEVMDIIDRRLNDKGKNWRHVFK 78
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 330 YWVVYACFSIVEY--FSDFIVGWFPLYWLLKCIFVIWCYLP 446
Y Y FSI + FSDF++ YW+ + + W Y P
Sbjct: 146 YGYFYLFFSIALFLLFSDFLI-----YWIHRALHHRWLYAP 181
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 142 LVQNISS-MACFCRSDFVLCCLYTLVIW 62
L+++IS+ +ACF F+LC + + V+W
Sbjct: 225 LIKSISTYIACFAMLIFLLCNVGSHVVW 252
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 377 FHRRLVSIVLAVKVHLRDLVLPAD*IQRVPRDLLPYHSSLLPEAHGRIDDMGQHRE 544
+ RRL+SI+ +++ H+R+ + P + R+ R+ P S P + D +R+
Sbjct: 439 YERRLLSIMESIRPHIRN-IDPFGGLSRLGREEYPRRLSNPPPSQKTNQDAWTNRK 493
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,492
Number of Sequences: 5004
Number of extensions: 65609
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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