Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0224
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0392 + 17131839-17131943,17134182-17134258,17134385-171344... 87 8e-18
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 85 4e-17
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 81 7e-16
06_01_0865 - 6571056-6571190,6571737-6571977,6572279-6572401,657... 72 3e-13
02_05_0743 + 31425827-31425888,31426733-31426759,31426840-314269... 72 3e-13
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925... 71 8e-13
08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316 69 3e-12
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 65 5e-11
09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416 64 9e-11
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 63 2e-10
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 59 3e-09
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735... 55 5e-08
11_01_0354 + 2665570-2665601,2665796-2665894,2667158-2667202,266... 45 4e-05
12_01_0375 + 2930807-2930838,2930936-2930999,2931127-2931333,293... 31 0.58
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281... 29 3.1
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 29 3.1
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 28 5.4
08_02_0920 - 22633777-22633791,22635103-22635399,22635491-226356... 28 5.4
01_05_0148 + 18609853-18610058,18610347-18612669 28 5.4
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 7.1
03_06_0651 + 35297560-35297895,35298881-35298991,35299670-352997... 27 9.4
01_06_0492 - 29769252-29769330,29769432-29769508,29769604-297697... 27 9.4
01_03_0306 + 14875755-14876822 27 9.4
>11_04_0392 +
17131839-17131943,17134182-17134258,17134385-17134411,
17134512-17134634,17134738-17134981,17135081-17135098
Length = 197
Score = 87.4 bits (207), Expect = 8e-18
Identities = 40/112 (35%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Frame = +3
Query: 258 VYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWC 437
+YP Y S++A+ESP K DD +WL YW++Y+ ++VE + ++ W P+++ LK +F+ W
Sbjct: 67 LYPLYASVQAMESPSKLDDEQWLAYWILYSFITLVEMLLESLIYWIPIWYELKLLFIAWL 126
Query: 438 YLPTEYNGSLVIYYRIIRPYYQKHMVVSM---IWANTGKQDLKCRFNGNPKN 584
LP + G+ IY R +R +KH + A+ GK+D K + +PK+
Sbjct: 127 ALP-NFRGAAFIYNRFVREQLRKHGLAGAGAGAAASVGKKD-KSSPSSSPKD 176
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/98 (38%), Positives = 58/98 (59%)
Frame = +3
Query: 261 YPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCY 440
YP Y S+KA+E+ DD +WLTYWV+Y+ ++ E I+ W P + +K IF+ W
Sbjct: 26 YPLYASVKAIETKSPVDDQQWLTYWVMYSLITLFELTFASIIQWLPFWPSMKLIFICWLV 85
Query: 441 LPTEYNGSLVIYYRIIRPYYQKHMVVSMIWANTGKQDL 554
LP +NG+ +Y +RP + KH +V+ IW K+ L
Sbjct: 86 LP-YFNGAAFVYQNYVRPMFVKHQMVN-IWYVPQKKGL 121
>01_06_0575 - 30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 81.0 bits (191), Expect = 7e-16
Identities = 36/88 (40%), Positives = 54/88 (61%)
Frame = +3
Query: 258 VYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWC 437
+YP Y SM+A+ESP DD +WLTYWV+Y+ ++ E ++ WFPL+ +K +F W
Sbjct: 905 LYPLYASMRAIESPSTLDDQQWLTYWVLYSLITLFELSCWKVLQWFPLWPYMKLLFCCWL 964
Query: 438 YLPTEYNGSLVIYYRIIRPYYQKHMVVS 521
LP +NG+ IY +R Y++ VS
Sbjct: 965 VLPI-FNGAAYIYETHVRRYFKIGQYVS 991
>06_01_0865 -
6571056-6571190,6571737-6571977,6572279-6572401,
6572501-6572527,6573954-6574009
Length = 193
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/98 (31%), Positives = 54/98 (55%)
Frame = +3
Query: 261 YPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCY 440
YP Y S++A+E+ DD +WLTYWV+Y+ ++ E ++ W P + K F W
Sbjct: 26 YPLYASVRAIETKSPVDDQQWLTYWVLYSFITLFELTFAPVIEWLPFWSYAKLFFNCWLV 85
Query: 441 LPTEYNGSLVIYYRIIRPYYQKHMVVSMIWANTGKQDL 554
LP ++G+ +Y +RP + +V+ +W K++L
Sbjct: 86 LPC-FHGAAYVYDHFVRPMFVNRQIVN-VWYVPRKENL 121
>02_05_0743 +
31425827-31425888,31426733-31426759,31426840-31426962,
31427252-31427492,31427655-31427780
Length = 192
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/90 (35%), Positives = 50/90 (55%)
Frame = +3
Query: 261 YPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCY 440
YP Y S++A+E+ DD +WLTYWV+Y+ ++ E ++ W PL+ K F W
Sbjct: 28 YPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFSPVLEWLPLWSYAKLFFNCWLV 87
Query: 441 LPTEYNGSLVIYYRIIRPYYQKHMVVSMIW 530
LP +NG+ +Y +RP +V+ IW
Sbjct: 88 LP-YFNGAAHVYEHFVRPMVVNQQIVN-IW 115
>07_03_0945 -
22791754-22791863,22792295-22792367,22792457-22792552,
22793268-22793331,22793957-22794008,22794525-22794622,
22795108-22795166,22795981-22796013
Length = 194
Score = 70.9 bits (166), Expect = 8e-13
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +3
Query: 264 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 443
P Y + +A+E + + +WL YW Y FSI E F+D I+ P Y+ +K ++W
Sbjct: 39 PVYSTFRAIEKKDQKEKERWLLYWAAYGSFSIAEIFADQILSSVPFYYHVKFAILVWLQF 98
Query: 444 PTEYNGSLVIYYRIIRPYYQKH 509
P+ +G+ +Y R +RP++ KH
Sbjct: 99 PSN-SGAKHVYRRYMRPFFLKH 119
>08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316
Length = 127
Score = 68.9 bits (161), Expect = 3e-12
Identities = 25/74 (33%), Positives = 50/74 (67%)
Frame = +3
Query: 288 LESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSL 467
+ESP K DD +WL YW++Y+ +++E ++ ++ W P+++ +K +FV W LP ++ G+
Sbjct: 1 MESPTKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPVKVLFVAWLVLP-QFKGAS 59
Query: 468 VIYYRIIRPYYQKH 509
IY +++R +K+
Sbjct: 60 FIYKKLVREQLRKY 73
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 FVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 428
+ YPAY K +E P+ + W YW++ A +++E F DF + W P Y K +F
Sbjct: 69 YAYPAYECYKTVELNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWLPFYSEAKLMFF 128
Query: 429 IWCYLPTEYNGSLVIYYRIIRPYYQKH 509
I+ + P + G+ IY RPY +H
Sbjct: 129 IYLWYP-KTKGTTYIYGTFFRPYISQH 154
>09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416
Length = 98
Score = 64.1 bits (149), Expect = 9e-11
Identities = 26/76 (34%), Positives = 46/76 (60%)
Frame = +3
Query: 288 LESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSL 467
+ES K DD +WL YW++Y+ +++E ++ W PL++ K +FV W LP ++ G+
Sbjct: 1 MESTSKVDDEQWLVYWILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLP-QFRGAS 59
Query: 468 VIYYRIIRPYYQKHMV 515
IY + +R +K+ V
Sbjct: 60 FIYDKFVREQLKKNRV 75
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 FVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 428
+ YPAY K +E P+ + W YW++ A +++E F DF + W PLY K +F
Sbjct: 16 YAYPAYECYKTVELNKPEIEKLIFWCQYWILVALLTVLERFGDFAISWLPLYSEAKLMFF 75
Query: 429 IWCYLPTEYNGSLVIYYRIIRPYYQKH 509
I+ + P G+ +Y RPY ++
Sbjct: 76 IYLWCP-RTKGTSYVYETFFRPYISQY 101
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 FVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 428
+ YPAY K +E P+ + W YW++ A ++ E D V W P+Y K F+
Sbjct: 16 YAYPAYDCYKTVELNRPEVEQLRFWCQYWILLAVLTVFERVGDNFVSWLPMYSEAKLAFI 75
Query: 429 IWCYLP--TEYNGSLVIYYRIIRPYYQKH 509
++ + P + G+ +Y +PY KH
Sbjct: 76 VYLWYPKTQHFQGTSYVYESFFKPYIGKH 104
>09_06_0070 -
20670387-20670473,20672418-20672645,20673388-20673508,
20673604-20673702,20673802-20673833
Length = 188
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 FVYPAYMSMKALE--SPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 428
+ YPAY K LE PQ D W YW++ A + +E + F V W P+Y K V
Sbjct: 16 YAYPAYDCYKTLELNKPQIDQLRFWCQYWILLAFLTTLETITYFTVSWLPMYGEAKLALV 75
Query: 429 IWCYLPTEYNGSLVIYYRIIRPYYQKH 509
++ + P + G+ +Y ++P +H
Sbjct: 76 LYLWYP-KTRGAKHVYESYLQPVLARH 101
>11_01_0354 +
2665570-2665601,2665796-2665894,2667158-2667202,
2667293-2667356,2667497-2667709,2669960-2670160
Length = 217
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +3
Query: 255 FVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIW 434
+ PA+ K LE+ + DD L +W Y + + V W P+Y +K F ++
Sbjct: 16 YAMPAFECFKTLET--RPDDAHMLRFWCQYWIIVSMVIACESFVSWMPMYGEIKLAFFVY 73
Query: 435 CYLPTEYNGSLVIYYRIIRP 494
+ P + GS V+Y IRP
Sbjct: 74 LWYP-KTKGSDVVYDSFIRP 92
>12_01_0375 +
2930807-2930838,2930936-2930999,2931127-2931333,
2932385-2932458,2932831-2932858,2933268-2933456
Length = 197
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 381 IVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKH 509
++ W P+Y +K F ++ + P + GS V+Y +RP ++
Sbjct: 8 LISWMPMYGEIKLAFFVYLWYP-KTKGSDVVYDTFLRPIVMQY 49
>08_02_0919 -
22627147-22627326,22627646-22627726,22627827-22628103,
22629451-22629755,22629835-22629987,22630318-22631076
Length = 584
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 125 VHGLLLSFRLCSMLSLYSCNLDAIVRSFSG*PNV 24
++ L SFR + L LY C L + F+G PN+
Sbjct: 114 LNSCLFSFRELTSLKLYCCGLPNLPAEFAGFPNL 147
>08_02_0501 + 17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +3
Query: 321 WLTYWVVYACFSIVEYFSDFIVGW-----FPLYWLLKCIFVIWCYLP 446
W T+ V+Y F S + V W PLYWL + V+ +P
Sbjct: 1095 WYTFLVIYGSFPPTISTSAYHVFWEACASSPLYWLSTLVIVVTALIP 1141
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 369 FSDFIVGWFPLYWLLKCIFVI 431
+S+ IV WFP++ CIFVI
Sbjct: 84 YSNGIVQWFPVFEYWSCIFVI 104
>08_02_0920 -
22633777-22633791,22635103-22635399,22635491-22635646,
22636118-22636203,22637969-22638791
Length = 458
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 125 VHGLLLSFRLCSMLSLYSCNLDAIVRSFSG*PNV 24
+H + S R + L L SC L A FSG PN+
Sbjct: 138 LHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNL 171
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 472 ITRDPLYSVGR*HQITKMHFNSQYNGNQ 389
+ DPL S+ R +T++HF YNG +
Sbjct: 714 LKEDPLPSLSRLLNLTELHFTRAYNGEK 741
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -2
Query: 430 ITKMHFNSQYNGNQPTMKSEKYSTIE-KQAYTTQYVSHFVSSSFCGDS 290
+T M FN YNG QP + + K+A T Y S C DS
Sbjct: 1339 VTTMKFNETYNGQQPVVLDWAIGKVGCKEANMTSYACRSKHSE-CVDS 1385
>03_06_0651 +
35297560-35297895,35298881-35298991,35299670-35299744,
35300165-35300225,35300406-35300479,35300564-35300668,
35301099-35301206,35301604-35301707,35302005-35302223,
35302505-35302646,35302694-35302825,35302962-35303066
Length = 523
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 258 VYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWL 410
V Y+S + ++ PQ +D ++ VV ++ YF+ + LYWL
Sbjct: 276 VISQYVSSQVMQPPQNNDPSQQGAQAVVKFLPLLIGYFALSVPSGLSLYWL 326
>01_06_0492 -
29769252-29769330,29769432-29769508,29769604-29769761,
29769879-29769964,29770058-29770085,29771223-29771730
Length = 311
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 179 KMYNLFTPTFCSASSKYFVHGL--LLSFRLCSMLSLYSCNLDAI 54
K + LFTP CS +K+ LLSF++ S Y N+ I
Sbjct: 29 KWWKLFTPEQCSGINKFVAKFSIPLLSFQVISTTDPYDMNIKLI 72
>01_03_0306 + 14875755-14876822
Length = 355
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = -2
Query: 430 ITKMHFNSQYNGNQPTMKSEKYSTI--EKQAYTTQYVSHFVSSSFCGDSR 287
IT M FN Y G QP + + E T Y H +S C DS+
Sbjct: 221 ITTMRFNDTYEGQQPLVLDWAIGDVSCEVAKNMTSYACH-SGNSICVDSK 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,760,617
Number of Sequences: 37544
Number of extensions: 425177
Number of successful extensions: 1071
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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