Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0224
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 124 5e-29
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088) 37 0.012
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 32 0.34
SB_55806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 29 2.4
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 29 2.4
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 29 2.4
SB_12872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 29 2.4
SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 2.4
SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_39096| Best HMM Match : Exo_endo_phos (HMM E-Value=4.6e-10) 29 2.4
SB_11056| Best HMM Match : FaeA (HMM E-Value=5.6) 29 2.4
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 3.2
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24) 29 4.2
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7) 28 5.5
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_23748| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_476| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 7.3
SB_45400| Best HMM Match : MAM (HMM E-Value=0) 28 7.3
SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 27 9.7
SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2) 27 9.7
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1) 27 9.7
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 124 bits (300), Expect = 5e-29
Identities = 49/85 (57%), Positives = 66/85 (77%)
Frame = +3
Query: 255 FVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIW 434
F YPAY S+KA+ES QKDDDT+WL YWVV+A F+IVE+FSD ++ WFPLY+L K IF+ W
Sbjct: 70 FAYPAYQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGW 129
Query: 435 CYLPTEYNGSLVIYYRIIRPYYQKH 509
C P +NGS +Y ++I+P+ +H
Sbjct: 130 CMAPVSWNGSDTLYQKVIKPFVLRH 154
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +1
Query: 82 DNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGSC 261
+N+E L +K+ +T E+K V +LY+FLGLV LYL+FG+GA+LI +G
Sbjct: 13 ENLENWLEEKNY-FTDALGKVEEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFA 71
Query: 262 TP 267
P
Sbjct: 72 YP 73
>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
Length = 110
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 258 VYPAYMSMKALESPQKDDDTKWLTYW 335
V+P Y S+ A+E+P + TKWL YW
Sbjct: 85 VFPVYASISAIENPDYEIGTKWLMYW 110
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 32.3 bits (70), Expect = 0.34
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -1
Query: 527 YHRYDHVLL---VVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVLHD 357
YHR D VL +V +VV H+ PVV R H+ + V +P ++H
Sbjct: 1369 YHRPDVVLHRPDIVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPPLVHQPIIHS 1425
Query: 356 RKTGVHHPICKPF 318
T V HP +PF
Sbjct: 1426 HDTYVSHPFFEPF 1438
>SB_55806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V ++ DH + KP + K+L
Sbjct: 41 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIIAFPNSVSDHSAIICDVDMRKPCASK--KIL 98
Query: 362 HDR 354
H R
Sbjct: 99 HRR 101
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 145 RLVQNISSMACFCRSDFVLCCLYTLVIWMPL 53
R ++NI + C S F LCC + L W+ L
Sbjct: 100 RTLENIRARRCMRTSAFGLCCRFILAHWVKL 130
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V +V DH + KP + K+L
Sbjct: 188 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 245
Query: 362 HDR 354
H R
Sbjct: 246 HRR 248
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V +V DH + KP + K+L
Sbjct: 492 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 549
Query: 362 HDR 354
H R
Sbjct: 550 HRR 552
>SB_12872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V +V DH + KP + K+L
Sbjct: 41 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 98
Query: 362 HDR 354
H R
Sbjct: 99 HRR 101
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V +V DH + KP + K+L
Sbjct: 871 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 928
Query: 362 HDR 354
H R
Sbjct: 929 HRR 931
>SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V +V DH + KP + K+L
Sbjct: 582 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 639
Query: 362 HDR 354
H R
Sbjct: 640 HRR 642
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 257 EPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSA 141
+P+ H S+P+P + + PVN T P TP +A
Sbjct: 226 QPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263
>SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V +V DH + KP + K+L
Sbjct: 1381 VGPTHRKDHTLDLVVVRDGDLSVRGRPKIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 1438
Query: 362 HDR 354
H R
Sbjct: 1439 HRR 1441
>SB_39096| Best HMM Match : Exo_endo_phos (HMM E-Value=4.6e-10)
Length = 279
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V +V DH + KP + K+L
Sbjct: 188 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 245
Query: 362 HDR 354
H R
Sbjct: 246 HRR 248
>SB_11056| Best HMM Match : FaeA (HMM E-Value=5.6)
Length = 261
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V +V DH + KP + K+L
Sbjct: 12 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 69
Query: 362 HDR 354
H R
Sbjct: 70 HRR 72
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V ++ DH + KP + K+L
Sbjct: 188 VGPTHRKDHTLDLVVVRDGDLSVRGRPEIIAFPNSVSDHSAIICDVDMPKPCASK--KIL 245
Query: 362 HDR 354
H R
Sbjct: 246 HRR 248
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 337 TQYVSHFVSSSFCGDSRAFIDMYAGYTNRSS 245
T +V HFV + FCG++R+ + + + S
Sbjct: 774 TAFVRHFVLARFCGENRSIVINFRSFNRNPS 804
>SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24)
Length = 568
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR D V ++ S DH + KP + K L
Sbjct: 12 VGPTHRKDHTPDLVVVRDGDLSVRGRPEIMHSPNSVSDHSAIICDVDMPKPCASK--KRL 69
Query: 362 HDR 354
H R
Sbjct: 70 HRR 72
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 348 CFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 476
C ++V +G F +++ +C CY+P + NGS IY
Sbjct: 374 CVTVVHDPPFLKIGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416
>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
Length = 483
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 270 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 422
Y+ + + P+K D WL + + + YF + I +F WL KCI
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 356
>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 270 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 422
Y+ + + P+K D WL + + + YF + I +F WL KCI
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 170
>SB_23748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 578 WIAIKTAF*ILFPCVGPYHRYDHVLLVVR 492
++ I+T F I FPC+ Y +LL+VR
Sbjct: 165 FVVIQTIFFITFPCITLTISYIRILLIVR 193
>SB_476| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 252
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 578 WIAIKTAF*ILFPCVGPYHRYDHVLLVVR 492
++ I+T F I FPC+ Y +LL+VR
Sbjct: 126 FVVIQTIFFITFPCITLTISYIRILLIVR 154
>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
Length = 257
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 417 CIFVIWCYLPTEYNGSLVIYYRIIRP 494
C+ + CY + YN + +YY +RP
Sbjct: 162 CVEAVGCYRDSGYNRAFPVYYADLRP 187
>SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 40 LKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAE-QKVGVNRLYIFLG 186
LKD+T ASK E + EQS+ K + K+ L + Q +Y F G
Sbjct: 43 LKDKTKASKATEKPEIFEQSVMGKVQTNIKFHNLEDRQDYRDESVYTFCG 92
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR + V +V DH + KP + K+L
Sbjct: 188 VGPTHRKDHTLDLVVVRDGNLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 245
Query: 362 HDR 354
H R
Sbjct: 246 HRR 248
>SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)
Length = 273
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = -2
Query: 433 QITKMHFNSQYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYT 257
Q+ + N N+ K KYS+ +Q Y ++ VSS F F Y T
Sbjct: 137 QMVEFVITGNPNENKTHGKWPKYSSENRQVYQAAFIESGVSSDFLAQKADFWTRYLPQT 195
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 536 VGPYHRYDHV--LLVVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVL 363
VGP HR DH L+VVR + V +V DH + KP + K+L
Sbjct: 292 VGPTHRKDHTLDLVVVRDGNLSVRGRPEIVAFPNSVSDHSAIICDVDMPKPCASK--KIL 349
Query: 362 HDR 354
H R
Sbjct: 350 HRR 352
>SB_48325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 872
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 46 DRTMASKLQEYKDNIEQSLNDKSKP 120
DRT K++E N+++S +D SKP
Sbjct: 89 DRTKKDKVEERPPNLQKSFSDFSKP 113
>SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)
Length = 388
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 49 RTMASKLQEYKDNIEQSLNDKSKPWTKYFELAEQK 153
R +SKLQ+YK Q+L+ W +Y + +K
Sbjct: 190 RDKSSKLQQYKYEKTQALDSNFPKWKEYIQQEAKK 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,971,894
Number of Sequences: 59808
Number of extensions: 513391
Number of successful extensions: 1745
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1735
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -