Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0224
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...   111   3e-25
Z81113-6|CAD21647.2|  295|Caenorhabditis elegans Hypothetical pr...    98   4e-21
AF045646-11|AAK29829.1|  205|Caenorhabditis elegans Hypothetical...    89   2e-18
U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical pr...    73   2e-13
U97403-3|AAB52473.1|  142|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    29   2.1  
Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF016420-6|AAB65311.3|  530|Caenorhabditis elegans Udp-glucurono...    28   6.4  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score =  111 bits (268), Expect = 3e-25
 Identities = 46/85 (54%), Positives = 66/85 (77%)
 Frame = +3

Query: 255 FVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIW 434
           FVYPAYMS+KA+ES  K+DDT+WLTYWV++A  S+VE+FS  IV  FP+YWL K IF+++
Sbjct: 69  FVYPAYMSIKAIESSNKEDDTQWLTYWVIFAILSVVEFFSVQIVAVFPVYWLFKSIFLLY 128

Query: 435 CYLPTEYNGSLVIYYRIIRPYYQKH 509
            YLP+ + G+  +Y+R ++P   +H
Sbjct: 129 LYLPS-FLGAAKLYHRFVKPVAARH 152



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/68 (38%), Positives = 42/68 (61%)
 Frame = +1

Query: 64  KLQEYKDNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELIC 243
           ++Q+  D++++ L++ S   T      EQK GV RL++ LG+V    LYL+FG  A+L+C
Sbjct: 6   QVQKVLDDVDKQLHEPSTV-TNVLATVEQKTGVKRLHLVLGVVGLQALYLIFGHSAQLVC 64

Query: 244 NSIGSCTP 267
           N +G   P
Sbjct: 65  NFMGFVYP 72


>Z81113-6|CAD21647.2|  295|Caenorhabditis elegans Hypothetical
           protein T03F6.6 protein.
          Length = 295

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 42/88 (47%), Positives = 63/88 (71%)
 Frame = +3

Query: 261 YPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCY 440
           YPAY+S+KA+ +   DDDT WL YW V+  FSI+++F+  I+ +FP+YW+ K  F+++ Y
Sbjct: 88  YPAYVSVKAIRTEGTDDDTMWLIYWTVFGAFSIIDFFAASIMSYFPIYWVAKAAFLLYLY 147

Query: 441 LPTEYNGSLVIYYRIIRPYYQKHMVVSM 524
           LP E +GS VIY+++I P+   HM  SM
Sbjct: 148 LP-ETHGSHVIYHQLIDPFV-AHMEKSM 173



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 145 EQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGSCTP 267
           E   G+ R  +  GL+    +Y++ G GAE +CN IG   P
Sbjct: 49  EDATGLKREMLAYGLIGLNCVYMIIGSGAEFVCNLIGVAYP 89


>AF045646-11|AAK29829.1|  205|Caenorhabditis elegans Hypothetical
           protein F56B3.6 protein.
          Length = 205

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 36/80 (45%), Positives = 53/80 (66%)
 Frame = +3

Query: 255 FVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIW 434
           F YP Y S+KA+ SP  DDDT WL YW  +A   +V++FS+ I+ WFP Y++ K  F+++
Sbjct: 109 FGYPTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVY 168

Query: 435 CYLPTEYNGSLVIYYRIIRP 494
            YLP +  GS++ Y  I+ P
Sbjct: 169 LYLP-QTQGSVMFYETIVDP 187



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 172 YIFLGLVAFTGLYLVFGFGAELICNSIG 255
           Y   GL+AF   +LVFG  A L+CN IG
Sbjct: 84  YAAFGLIAF---FLVFGSVARLLCNLIG 108


>U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical
           protein T19C3.4 protein.
          Length = 229

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +3

Query: 258 VYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVG-WFPLYWLLKCIFVIW 434
           +YPAY S KA+ +    +  KW+ YW+V+A +S +E   D ++  WFP Y+ LK +F+ W
Sbjct: 16  LYPAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAFWFPFYFQLKIVFIFW 75

Query: 435 CYLPTEYNGSLVIYYRIIRPYYQKH 509
              P    G+ ++Y + + P   +H
Sbjct: 76  LLSPWT-KGASILYRKWVHPTLNRH 99


>U97403-3|AAB52473.1|  142|Caenorhabditis elegans Hypothetical
           protein T10E9.6 protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 330 YWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLP 446
           YW ++  F    Y  D I+ + PLY+++K    I  +LP
Sbjct: 91  YWTIFGFF----YLFDRILEYIPLYYIIKLAVFIGLFLP 125


>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 333 WVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV--IWCY 440
           ++  AC      +S    GW  +YWLL C+ +  +W Y
Sbjct: 110 FIYRACVLARPIWSKIFDGWKLIYWLLYCLIIGGLWSY 147


>Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical
           protein F11C1.5c protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 407 AVKVHLRDLVLPAD*IQRVPRDLLPYHSSLLPEAHGRIDD 526
           AV+  L+  VL  D ++R  R++LP  ++LL     ++DD
Sbjct: 136 AVRAALKGRVLVIDGVERAERNVLPILNNLLENREMQLDD 175


>Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical
           protein F11C1.5b protein.
          Length = 1339

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 407 AVKVHLRDLVLPAD*IQRVPRDLLPYHSSLLPEAHGRIDD 526
           AV+  L+  VL  D ++R  R++LP  ++LL     ++DD
Sbjct: 136 AVRAALKGRVLVIDGVERAERNVLPILNNLLENREMQLDD 175


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical
           protein F11C1.5a protein.
          Length = 1804

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 407 AVKVHLRDLVLPAD*IQRVPRDLLPYHSSLLPEAHGRIDD 526
           AV+  L+  VL  D ++R  R++LP  ++LL     ++DD
Sbjct: 136 AVRAALKGRVLVIDGVERAERNVLPILNNLLENREMQLDD 175


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 267 AYMSMKALESPQ--KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWC 437
           A  S  + E+P   K+    ++ YW VYA F   E F   ++ W     L + IF+  C
Sbjct: 139 AISSTSSYENPSFLKNHQDFFVRYWTVYAVFVTGESFLSSLIHWD--LRLFRLIFMSMC 195


>Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical
           protein F36G9.8 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 191 TKPKKMYNLFTPTFCSASSKYFVHGLLLSFRLCSMLSLYSCNLDAIVRSFSG*P 30
           T P  ++ ++   FC           LL F++CSM S +  N+  +   FS  P
Sbjct: 21  TTPVNIFGVYVILFCQTKQLASYRWHLLVFQVCSMTSDFLLNIGMLPVIFSPFP 74


>AF016420-6|AAB65311.3|  530|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein7 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 587 IIFWIAIKTAF*ILFPCVGPYHRYDHVLLVVRTNDTVVDH-EGPVVFSRQV 438
           + F++    AF  L   + P + Y HV  +    DT+ DH    VVF +Q+
Sbjct: 6   LTFFLQYSYAFKYLI--ISPIYSYSHVKFMSNIADTLADHGHEVVVFQQQI 54


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 254 PIELHINSAPK-PNTKYKPVNATKPKKMYNLF-TPTFCSASS 135
           P  + +N+ P  PNTK  P N T   ++  LF  P+ CS  S
Sbjct: 516 PAMMAVNTPPATPNTKEAPTNCTSLLQVPRLFDCPSPCSVPS 557


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
            C08B11.3 protein.
          Length = 1244

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 260  HEPIELHINSAPKPNTKYKPVNA 192
            H+PI+ HI S P P  +  PV A
Sbjct: 1218 HQPIQQHIPSQPSPLVQTTPVRA 1240


>U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical
           protein C34G6.5 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 187 SLRKCTICSRRPFVRLVQNISSMACFCRSDF 95
           S + CTIC +R F     N S   CFCR ++
Sbjct: 323 SRQPCTICQKRSF-----NNSMGVCFCRKNY 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,988
Number of Sequences: 27780
Number of extensions: 379627
Number of successful extensions: 1182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)