Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0224
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 248 ELHINSAPKPNTKYKPVN 195
           ++H    PKP TK KP +
Sbjct: 244 KVHATKPPKPQTKTKPTS 261


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 474 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 358
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 474 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 358
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 474 RSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRKSTPR 358
           R+R +R I +  STR R       ++ +    N +STPR
Sbjct: 230 RARQSR-INAVQSTRHREADDAEESVSSETNHNERSTPR 267


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 388 PTMKSEKYSTIEKQAYTTQYVSHFVSSSFC 299
           PT+ S+K S I+     T+Y+        C
Sbjct: 281 PTLPSDKLSKIQTLKLATRYIDFLFQVLHC 310


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/77 (19%), Positives = 29/77 (37%)
 Frame = -1

Query: 407 PVQWKPADDEIGKVLHDRKTGVHHPICKPFCIVILLR*LQSLHRHVRGVHEPIELHINSA 228
           P + +P     GK+ +     +H   C     +   R ++ LH  +   H    LH+N  
Sbjct: 111 PRRHRPVCASNGKI-YANHCELHRAACHSGSSLTKSRLMRCLHHDIENAHIRRTLHMNRT 169

Query: 227 PKPNTKYKPVNATKPKK 177
               +K      ++ +K
Sbjct: 170 SLKTSKIVSYPKSRSRK 186


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 290 QSLHRHVRGVHEPIELHINSAPKPNTKYKPVNATK-PKK 177
           + L + ++G+  P+E H+         Y P    K P+K
Sbjct: 175 KGLGKQLQGISTPVEAHLRKGRGAIGAYGPEKGPKVPEK 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,840
Number of Sequences: 438
Number of extensions: 4749
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)