Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0223
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 231 SNINTQTVSHNANWNTQKH*LTNYN 157
           S+++ +T+ +N N+N   +   NYN
Sbjct: 83  SSLSNKTIHNNNNYNNNNYNNYNYN 107


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 124 ISKFINTTYLLVVICQLMFLRIPICVVGHGLRVNVALVTF 243
           IS   NTT L+++ C+    +  I ++   L +   LVTF
Sbjct: 50  ISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLVTF 89


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 217  ADRVPQRKLEYAKTLIDKLQRVSMW 143
            + +VP  +L +  + +DK +R   W
Sbjct: 1227 SQKVPPNQLTHEASELDKTRRYDFW 1251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,302
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)