Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0222
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.6  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   9.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 647 GTHNYLNYSANYGTNKF 597
           G HN+ NY++N  +N +
Sbjct: 63  GYHNHQNYNSNVLSNGY 79


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 647 GTHNYLNYSANYGTNKF 597
           G HN+ NY++N  +N +
Sbjct: 63  GYHNHQNYNSNVLSNGY 79


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 328 EWACATNLTESRSDRVSAVAHARVSETRAWFCKK 429
           E+A    LTE R  ++SA      ++ + WF  K
Sbjct: 246 EFAENRYLTERRRQQLSAELGLNEAQIKIWFQNK 279


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 301 CVYLLYECSEWACATNLTE 357
           CVY + E SE  C T +++
Sbjct: 14  CVYSVSEISEETCETLMSD 32


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 647 GTHNYLNYSANYGTNKF 597
           G HN+ NY++N  +N +
Sbjct: 63  GYHNHQNYNSNVLSNGY 79


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 647 GTHNYLNYSANYGTNKF 597
           G HN+ NY++N  +N +
Sbjct: 63  GYHNHQNYNSNVLSNGY 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,738
Number of Sequences: 336
Number of extensions: 2687
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)