Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0222
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    43   4e-05
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    43   5e-05
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    38   0.001
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    27   3.4  
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    26   4.5  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
 Frame = +2

Query: 11  EEALDAAIK----WLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           +EA+D A+K    WL+ N  A  +EY+ ++K LE V  PI+AK+Y
Sbjct: 565 KEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIY 609


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 17/43 (39%), Positives = 29/43 (67%)
 Frame = +2

Query: 5   TREEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           T ++A+   I+WL+ N  A  +E++ ++K LE V  PI+AK+Y
Sbjct: 567 TVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIY 609


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 14  EALDAAIKWLE-DNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           +A++   +WLE   +DA  EE++ Q++ L+ VV PI  KLY
Sbjct: 601 DAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 8   REEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPII 121
           ++E L     W+E N+D  +EE  K  K  ED+ + I+
Sbjct: 409 KDEILTKTQVWMELNKDYLAEEEAKNLKLQEDLKKGIV 446


>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAK 127
           E+ L+  ++ ++ N+  ESE+YK  +++L  V + ++A+
Sbjct: 45  EDVLENGLEHVQSNEFTESEDYKSIERSLA-VTEAVMAR 82


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 155 AVLHPGLGKVWR*WAAPHLQ 96
           A+L PG G  W+ W  P+L+
Sbjct: 3   AILFPGQGVDWKTWMQPYLE 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,193
Number of Sequences: 5004
Number of extensions: 42462
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)