Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0222
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0540 + 9340379-9340592,9341250-9342988 53 2e-07
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229 52 4e-07
05_05_0109 - 22454539-22456268,22457069-22457279 51 8e-07
11_08_0075 + 28173220-28173433,28175348-28177083 50 1e-06
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 50 2e-06
03_06_0484 + 34233042-34233258,34235317-34237049 49 3e-06
03_02_0546 - 9381989-9383733,9385838-9386054 49 3e-06
08_01_0654 - 5639419-5641449 45 7e-05
05_04_0392 - 20889699-20891726 44 1e-04
05_04_0052 - 17515344-17517353 43 3e-04
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 41 0.001
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 35 0.071
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 29 4.7
03_05_0057 + 20350971-20351405 28 6.2
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 8.1
>03_02_0540 + 9340379-9340592,9341250-9342988
Length = 650
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E+A+D AI WL+ NQ AE+EE++ + K LE V PIIAK+Y
Sbjct: 577 EDAIDGAISWLDSNQLAEAEEFEDKMKELEGVCNPIIAKMY 617
>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
Length = 841
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E+A+D AI WL+ NQ AE++E++ + K LE + PIIAK+Y
Sbjct: 769 EDAIDGAINWLDSNQLAEADEFEDKMKELESICNPIIAKMY 809
>05_05_0109 - 22454539-22456268,22457069-22457279
Length = 646
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E+A+D AI WL+ NQ AE++E++ + K LE + PIIAK+Y
Sbjct: 576 EDAIDGAISWLDTNQLAEADEFEDKMKELEGICNPIIAKMY 616
>11_08_0075 + 28173220-28173433,28175348-28177083
Length = 649
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E+A+D AI+WL+ NQ AE++E+ + K LE + PIIAK+Y
Sbjct: 577 EDAIDQAIQWLDGNQLAEADEFDDKMKELEGICNPIIAKMY 617
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
EEAL A++WL++NQ AE EEY+++ K +E V PII+ +Y
Sbjct: 601 EEALKEALEWLDENQTAEKEEYEEKLKEVEAVCNPIISAVY 641
>03_06_0484 + 34233042-34233258,34235317-34237049
Length = 649
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/41 (51%), Positives = 32/41 (78%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E+A++ AI+WL++NQ AE EE++ + K LE + PIIAK+Y
Sbjct: 578 EDAVEQAIQWLDNNQLAEVEEFEDKMKELEGLCNPIIAKMY 618
>03_02_0546 - 9381989-9383733,9385838-9386054
Length = 653
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/41 (48%), Positives = 32/41 (78%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E+A++ AIKWL+ NQ AE++E++ + K LE + PII+K+Y
Sbjct: 578 EDAIEDAIKWLDGNQLAEADEFEDKMKELESLCNPIISKMY 618
>08_01_0654 - 5639419-5641449
Length = 676
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
EEA+ A +WL+ N DA EEY+++ + LEDV P+++ +Y
Sbjct: 611 EEAVREAYEWLDGNPDAGKEEYEEKLRELEDVCNPVMSAVY 651
>05_04_0392 - 20889699-20891726
Length = 675
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
EEA+ A +WL+ N DA EEY+++ + LEDV P+++ +Y
Sbjct: 611 EEAVREAHEWLDGNPDAGKEEYEEKLRELEDVCNPVMSAVY 651
>05_04_0052 - 17515344-17517353
Length = 669
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E A+ A +WL+ NQD EEY+++ + LEDV P+++ +Y
Sbjct: 608 EAAVMEAYEWLDGNQDVGKEEYEEKLRELEDVCNPVMSAVY 648
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Frame = +2
Query: 11 EEALDAAIKWLEDN----QDAESEEYKKQKKTLEDVVQPIIAKLY 133
E AL A++WLEDN + AE E+Y+++ K +E V PII ++Y
Sbjct: 606 ESALTEALEWLEDNDGGARTAEKEDYEEKLKEVEQVCGPIIKQVY 650
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 34.7 bits (76), Expect = 0.071
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 26 AAIKWLEDNQDAESEEYKKQKKTLEDVVQPI 118
AA +WL+ N AE E+Y+++ K LED P+
Sbjct: 605 AASEWLDGNPAAEKEDYEEKLKELEDACGPV 635
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 325 CTHTINIHTRANNTASIVRGXXAXKTIAAICAEITFGCDSV 203
C H ++HTR ++ S + + K ++ A T CDSV
Sbjct: 540 CLHLQDVHTRISSIVSTLPNVTSEKLSKSLEAIYTVACDSV 580
>03_05_0057 + 20350971-20351405
Length = 144
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 109 AAHHRQTLP-RPGWSTAPGGAG 171
A HHRQ P RP + PGGAG
Sbjct: 40 APHHRQPAPDRPSAAPEPGGAG 61
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 221 VWLRFSLITTRP*SRHLPAPPGAVLH 144
V+LR S++ P H P PPGA +H
Sbjct: 25 VFLRRSVLPPPPAPHHAPPPPGAHVH 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,030,111
Number of Sequences: 37544
Number of extensions: 273018
Number of successful extensions: 691
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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