Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0222
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)                       44   2e-04
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)                        41   8e-04
SB_17273| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       38   0.008
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)                     38   0.008
SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)                 28   6.3  
SB_48395| Best HMM Match : MAM (HMM E-Value=0)                         28   8.3  
SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)            28   8.3  

>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/36 (55%), Positives = 22/36 (61%)
 Frame = +2

Query: 26  AAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           A + WLE NQ AE EE    +K LE V  PII KLY
Sbjct: 670 ATLDWLEHNQSAEKEEIDAHQKELEGVCNPIITKLY 705


>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1097

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +2

Query: 32  IKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           +KWL+ NQ AE +E++  +K LE V  PII KLY
Sbjct: 580 LKWLDTNQTAEKDEFEYHQKELEKVCNPIITKLY 613


>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 640

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 17/43 (39%), Positives = 29/43 (67%)
 Frame = +2

Query: 5   TREEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           T +  ++  + WLE N  AE EE+++Q+K L+ V  PI+AK++
Sbjct: 570 TVKNKVEEVLNWLEKNSLAEKEEFEEQEKELQRVCSPIMAKVH 612


>SB_17273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 23  DAAIKWLEDNQDAES-EEYKKQKKTLEDVVQPIIAKL 130
           D   +WLE+N D  S EE  KQK+ L  V+QPI++KL
Sbjct: 8   DEKSEWLENNADTASLEEIVKQKEDLAGVLQPILSKL 44


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 5    TREEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQP 115
            T  EA++ AI W++ NQDA  E++KK+K+  + +  P
Sbjct: 1265 TITEAVEKAISWMDKNQDASVEDFKKEKRKWKMLYSP 1301


>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 823

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 23  DAAIKWLEDNQDAES-EEYKKQKKTLEDVVQPIIAKL 130
           D   +WLE+N D  S EE  KQK+ L  V+QPI++KL
Sbjct: 773 DEKSEWLENNADTASLEEIVKQKEDLAGVLQPILSKL 809


>SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)
          Length = 428

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 35  KWLEDNQDAESEEYKKQKKTLEDVVQPII 121
           +W E  ++  SE+YK +K+  E  ++P++
Sbjct: 292 EWRETLRNKSSEDYKAEKERFESALEPVM 320


>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
          Length = 901

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 404 SLTRA*ATADTRSDLDSVRFVAHAHSLHSYNKYTHSS 294
           S  RA   +D  + LD + F+ +    H++NKY H S
Sbjct: 37  SFKRAILESDDANTLDKI-FIVNEGKAHNFNKYYHES 72


>SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)
          Length = 427

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = -2

Query: 391 REQXQILDQISTL*GSSHTPTHCTHTINIHTRANNTASIVRGXXAXKTIAAICAEITFGC 212
           + Q ++ + +S++ GSS T       +N+ T  N+T  +++   +  TI    +E  F  
Sbjct: 328 KTQMRLRNILSSV-GSSDTGARYQSNLNLRTNMNSTELLMKSKESAITINLSHSEKDFDY 386

Query: 211 DSV*LQL 191
           DS+ L+L
Sbjct: 387 DSLELEL 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,115,703
Number of Sequences: 59808
Number of extensions: 356765
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)