Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0222
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 59 3e-09
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 59 3e-09
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 55 4e-08
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 55 4e-08
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 51 9e-07
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 48 6e-06
U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified vi... 30 1.4
Z66497-7|CAE17887.1| 197|Caenorhabditis elegans Hypothetical pr... 28 7.3
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 9.7
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 9.7
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E A++ AI+WL NQDA +EE K+QKK LE VVQPI++KLY
Sbjct: 228 ESAVERAIEWLGSNQDASTEENKEQKKELESVVQPIVSKLY 268
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E A++ AI+WL NQDA +EE K+QKK LE VVQPI++KLY
Sbjct: 597 ESAVERAIEWLGSNQDASTEENKEQKKELESVVQPIVSKLY 637
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2
Query: 5 TREEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
T EEA++ AI WL N +A +EE K+QKK LE VQPI++KLY
Sbjct: 598 TIEEAVEEAISWLGSNAEASAEELKEQKKDLESKVQPIVSKLY 640
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2
Query: 5 TREEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
T EEA++ AI WL N +A +EE K+QKK LE VQPI++KLY
Sbjct: 598 TIEEAVEEAISWLGSNAEASAEELKEQKKDLESKVQPIVSKLY 640
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 50.8 bits (116), Expect = 9e-07
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E+ D +KWL+ NQ AE EE++ Q+K LE + PII+KLY
Sbjct: 572 EDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 612
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +2
Query: 11 EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
E+ D +KWL+ NQ AE EE++ Q+K LE + +P ++KLY
Sbjct: 572 EDKCDEILKWLDSNQTAEKEEFESQQKDLEGLAKPDLSKLY 612
>U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform a
protein.
Length = 429
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -2
Query: 445 IQNAHFFYRTRHAFHSHVREQXQILDQISTL*GSSHTPTHCTHTINIHTRANNTASIVR 269
+ F + + +H+HV + + + HTP H +H+ + H + SIVR
Sbjct: 225 VHTGEHFQQWQKIYHAHVNHTSRTNEHAAVFPSHHHTPEHRSHSAD-HPKIERKDSIVR 282
>Z66497-7|CAE17887.1| 197|Caenorhabditis elegans Hypothetical
protein K08F8.7 protein.
Length = 197
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 500 SVDQSSCIESIILAHYETSSVFCMYLIVF 586
++ Q C +S+ ++ +SVFC ++VF
Sbjct: 115 AITQYGCYQSVSTGTFQVASVFCFLVLVF 143
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Frame = +3
Query: 516 PVSNRLF---SH--TMRRPQCSVCI*LFLETGKF 602
P++NR+ SH T+RR QC+ CI +F+ G++
Sbjct: 1234 PLANRVHIQRSHALTLRRFQCAYCIKVFVSVGEY 1267
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Frame = +3
Query: 516 PVSNRLF---SH--TMRRPQCSVCI*LFLETGKF 602
P++NR+ SH T+RR QC+ CI +F+ G++
Sbjct: 1234 PLANRVHIQRSHALTLRRFQCAYCIKVFVSVGEY 1267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,245,566
Number of Sequences: 27780
Number of extensions: 252109
Number of successful extensions: 669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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