Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0222
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09440.1 68416.m01121 heat shock cognate 70 kDa protein 3 (HS...    51   8e-07
At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1 (HS...    50   1e-06
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70...    50   2e-06
At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2 (HS...    48   8e-06
At1g16030.1 68414.m01924 heat shock protein 70, putative / HSP70...    46   2e-05
At1g56410.1 68414.m06487 heat shock cognate 70 kDa protein, puta...    45   6e-05
At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)...    44   1e-04
At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)...    44   1e-04
At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)...    44   1e-04
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    41   0.001
At5g27950.1 68418.m03366 kinesin motor protein-related kinesin h...    29   2.2  
At3g53510.1 68416.m05908 ABC transporter family protein breast c...    29   2.2  
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr...    28   5.1  
At4g21270.1 68417.m03074 kinesin-like protein A (KATA)                 28   6.8  
At5g61330.1 68418.m07696 rRNA processing protein-related contain...    27   9.0  

>At3g09440.1 68416.m01121 heat shock cognate 70 kDa protein 3
           (HSC70-3) (HSP70-3) identical to SP|O65719 Heat shock
           cognate 70 kDa protein 3 (Hsc70.3) {Arabidopsis
           thaliana}
          Length = 649

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 21/41 (51%), Positives = 32/41 (78%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E++++AAI+WLE NQ AE +E++ + K LE +  PIIAK+Y
Sbjct: 577 EDSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMY 617


>At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1
           (HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock
           cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
           thaliana}
          Length = 651

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 20/41 (48%), Positives = 32/41 (78%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E++++ AI+WLE NQ AE++E++ + K LE +  PIIAK+Y
Sbjct: 577 EDSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMY 617


>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
           putative strong similarity to heat shock protein
           GI:425194 [Spinacia oleracea]
          Length = 650

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/41 (48%), Positives = 32/41 (78%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E+A+D AI+WL+ NQ AE++E++ + K LE +  PIIA++Y
Sbjct: 577 EDAIDQAIEWLDGNQLAEADEFEDKMKELESLCNPIIARMY 617


>At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2
           (HSC70-2) (HSP70-2) identical to SP|P22954 Heat shock
           cognate 70 kDa protein 2 (Hsc70.2) {Arabidopsis
           thaliana}
          Length = 653

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E++++ AI+WL+ NQ  E++E++ + K LE V  PIIAK+Y
Sbjct: 577 EDSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMY 617


>At1g16030.1 68414.m01924 heat shock protein 70, putative / HSP70,
           putative similar to heat shock protein hsp70 GI:1771478
           from [Pisum sativum]
          Length = 646

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/41 (46%), Positives = 30/41 (73%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E+A+D  I+W+E NQ AE +E++ + K LE +  PII+K+Y
Sbjct: 576 EKAIDETIEWIEGNQLAEVDEFEYKLKELEGICNPIISKMY 616


>At1g56410.1 68414.m06487 heat shock cognate 70 kDa protein,
           putative / HSC70, putative / HSP70, putative strong
           similarity to heat shock cognate 70 kd protein 1
           SP:P22953 [Arabidopsis thaliana (Mouse-ear cress)]
          Length = 617

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/41 (43%), Positives = 30/41 (73%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E++++  I+WL+DNQ AE++E++ + K LE V   II K+Y
Sbjct: 575 EDSIEEVIQWLDDNQLAEADEFEHKMKELESVWSTIITKMY 615


>At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)
           similar to SWISS-PROT: Q39043; GI:1303695; luminal
           binding protein (BiP) [Arabidopsis thaliana]
          Length = 613

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E A   A++WL++NQ++E EEY ++ K +E V  PII  +Y
Sbjct: 548 EAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVY 588


>At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)
           similar to SWISS-PROT: Q39043; GI:1303695; luminal
           binding protein (BiP) [Arabidopsis thaliana]
          Length = 668

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E A   A++WL++NQ++E EEY ++ K +E V  PII  +Y
Sbjct: 603 EAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVY 643


>At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)
           SWISS-PROT:Q9LKR3 PMID:8888624
          Length = 669

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E A   A++WL++NQ++E EEY ++ K +E V  PII  +Y
Sbjct: 603 EAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVY 643


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +2

Query: 11  EEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQPIIAKLY 133
           E  L  A++WLE+N +AE E+Y ++ K +E V  P+I  +Y
Sbjct: 617 EGVLKEALEWLEENVNAEKEDYDEKLKEVELVCDPVIKSVY 657


>At5g27950.1 68418.m03366 kinesin motor protein-related kinesin
           heavy chain-like protein, potato, PIR:T07397
          Length = 625

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +3

Query: 126 NFTKARVEYRPRGRRKMTTSRTSCNQTESQPNVIS 230
           +FTKAR  Y  +GRR  +TS T+ N+T S+ + ++
Sbjct: 253 DFTKARWWYN-KGRRVRSTSWTNVNETSSRSHCLT 286


>At3g53510.1 68416.m05908 ABC transporter family protein breast
           cancer resistance protein (BCRP), Homo sapiens,
           EMBL:AF098951
          Length = 739

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 120 SPNFTKARVEYRPRGRRKMTTSRTSCNQTESQPNVISAQMA 242
           SP  TK+ VE+  + R K T+S++  N   S  + ISA ++
Sbjct: 369 SPEGTKSLVEFHKQWRAKQTSSQSRRNTNVSLKDAISASIS 409


>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 350

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +1

Query: 124 QTLPRPGWSTAPGGAGR*RLQGRVVIRLNRSQT*SPH 234
           QT P+   STA GG      Q R  IR  R Q   PH
Sbjct: 113 QTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPH 149


>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
          Length = 793

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 5   TREEALDAAIKWLEDNQDAESEEYKKQKKTLEDVVQ 112
           T+EE L A I  LE+N  +  E+  K++ + +D ++
Sbjct: 143 TKEEELQATISKLEENVVSLHEKLAKEESSTQDAIE 178


>At5g61330.1 68418.m07696 rRNA processing protein-related contains
           weak similarity to rRNA processing protein EBP2
           (EBNA1-binding protein homolog) (Swiss-Prot:P36049)
           [Saccharomyces cerevisiae]
          Length = 436

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 44  EDNQDAESEEYKKQKKTLEDVVQPIIAKL 130
           +DN+DA+ EE +K+ K L    Q I+  L
Sbjct: 107 DDNKDAQMEELEKEVKELRSQEQDILKNL 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,818
Number of Sequences: 28952
Number of extensions: 217904
Number of successful extensions: 535
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)