Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0221
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    28   0.063
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.1  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    22   5.5  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   5.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 0.063
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 46  KTQQWVTSKTHTLRPETPGPQPPS 117
           +T  W++S +  + P TP P PPS
Sbjct: 102 RTDDWLSSPSGNVPPLTPSPGPPS 125


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 78  VCLRCHPLLC 49
           +C+RCH  LC
Sbjct: 234 ICMRCHDQLC 243


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 147 GFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFMVKS 266
           GF+++     KIV +S +     GH +  L+G  IF + S
Sbjct: 114 GFLLILTPNGKIVFVSHTVEHLLGHLQTDLMGQSIFNITS 153


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 88   PETPGPQPPSPCNVRPCVKMVSLC*RVVH 174
            P+  GPQP S C+          C R +H
Sbjct: 1268 PKMGGPQPYSACSENAFAAYPGDCTRYLH 1296


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 452 GKELLCTVLKSCGEECVIASKQTQLSTNKPTQHL 553
           GK+L  T+ ++   +C   +++ + +  K   HL
Sbjct: 55  GKKLKSTIPEALSTDCAKCNEKVKANVRKVLHHL 88


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 106 EAPESPVSKCVSSMSPIVV 50
           EAP  PV + + S++P+V+
Sbjct: 55  EAPCDPVGRRLKSLAPLVL 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,325
Number of Sequences: 336
Number of extensions: 3918
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)