Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0221
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 4e-21
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33) 31 0.89
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 29 2.7
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 24 5.6
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 6.2
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 28 6.2
SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 28 6.2
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 28 6.2
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40) 28 8.3
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +3
Query: 51 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 230
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 68.1 bits (159), Expect = 6e-12
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +2
Query: 329 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 508
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 509 SK 514
K
Sbjct: 703 VK 704
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 528 ESC--VCFEAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPS 409
+SC +CF + S P + H+N+ P S NC P PS
Sbjct: 1285 QSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPS 1326
>SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)
Length = 657
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -2
Query: 353 HHPRY-QSVGSLRASREVRPCCVWRDRY--LHTFYHEDINPNQVNFSVAVLSGFGC 195
HH Q V LR RE+ PCC + +Y +D N Q N S V+ GC
Sbjct: 601 HHTEVIQKVALLRKQRELSPCCAPTKMFDLSLLYYDKDENLFQENVSNMVVEECGC 656
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 16 HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 138
H L K KT + T+K +T +P T P+ P +PC
Sbjct: 92 HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 64 TSKTHTLRPETPGPQPPSPCNVRPCVKMVSLC*RVVH-ARLLKCPH 198
T+K HT +P T P P N+ P + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +2
Query: 281 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 460
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 461 LLCTVLKSCGEECVIASKQTQL 526
T KS GEE V + L
Sbjct: 344 SAATYGKSDGEENVAQESEESL 365
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 23.8 bits (49), Expect(2) = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 97 PGPQPPSPCNVRP 135
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
Score = 23.0 bits (47), Expect(2) = 5.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 115 SPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLG 243
+PC ++ C + +S+ V ++K P P TL ++G
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIG 440
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 489 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 358
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 296 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 463
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 464 LCTVLKSCGEECVIASKQTQLS 529
LC L+ C Q+S
Sbjct: 95 LCMTLRRFAYPCRYEDLVPQIS 116
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 153 RNHFYAGPNIAW--GRWLRPRSLRSQSV 76
R F+ PN+A G+WL P+SLR+ V
Sbjct: 947 REGFFNNPNLAGCKGQWLGPKSLRASRV 974
>SB_36342| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 872
Score = 28.3 bits (60), Expect = 6.2
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +2
Query: 272 DICPSTHNMDVPHVKREDYQLTDISDDGYLTLM----ADNGDLREDLKIPDGDLGTQLRT 439
D+ S H +D+P+ E++ + +D ++ +D L E L+IPD T +
Sbjct: 592 DLNTSNH-IDLPYNSYENFDFDILEEDECMSEFRFHKSDIPLLAEMLQIPDRL--TLYQR 648
Query: 440 DFDSGKELLCTVLKSCGEECVIASKQTQLSTNKP 541
SG E LC VLK C A + S P
Sbjct: 649 SVCSGLEALCIVLKRLAYPCRYADMVAKFSRPVP 682
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 31 TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 135
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 141 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVG 242
+ G +M +G+PCKI + K G HG +H+ G
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG 50
>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
Length = 580
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 4 HQVGHISFLTVVKFKTQQWVTSK--THTLRPETPGPQP 111
H+V + + +V KT Q +S T+T+ P+ PG QP
Sbjct: 369 HRVRSSAGVKMVTLKTDQTASSSSGTYTMDPDVPGGQP 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,600,237
Number of Sequences: 59808
Number of extensions: 525946
Number of successful extensions: 1577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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