Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0220
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    26   4.0  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.1  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   9.3  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 127 HFVRATVALYQQVNCFNNYHSVYYHPVGIPRMIAF*EVLSWF 252
           H V    +L    N + +  S  Y+P   PR I + E   WF
Sbjct: 337 HTVTVDRSLSNDGNHWGSLSSTIYNPSSSPRTIVYFEKFPWF 378


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 370 IFNCYYLYLDSFLFKDMSY 314
           + +CYYL+L   LF++ +Y
Sbjct: 894 LLSCYYLHLSKKLFEESAY 912


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 593 FNVS*NLKFAPKLKLPVLSNDQIYFYNIIVTTACKV 486
           F+++  LK+   LK PVLS+D +  YN+    A ++
Sbjct: 581 FSLNGVLKYQSLLKPPVLSHDML-VYNLATNPASEI 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,495
Number of Sequences: 5004
Number of extensions: 49678
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)