Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0220
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819     32   0.45 
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586...    28   7.3  

>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
          Length = 598

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/21 (61%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
 Frame = +3

Query: 423 DYFYFLL-LLSIIGLCSYTHF 482
           DYFY+LL +LS++GL +Y HF
Sbjct: 564 DYFYWLLAVLSVLGLAAYLHF 584


>11_06_0297 +
           22056644-22058212,22058316-22058423,22058513-22058678,
           22059000-22059056,22059382-22059479,22059556-22059765,
           22060469-22060582,22060819-22060948,22061165-22061298,
           22062279-22062359,22062798-22062872,22063210-22063221
          Length = 917

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 425 LLLLFIIIKHYWSL*LYTFLILYKRS*QLYCKNIFDHCL 541
           L++L +II+  W L  +    L +RS  + C N  DHC+
Sbjct: 658 LIILHVIIQSLWHLRFFRIDFLRERSVWILCIN-EDHCI 695


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,803
Number of Sequences: 37544
Number of extensions: 251351
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)