Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0220
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.4  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   5.8  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   5.8  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   5.8  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   5.8  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   5.8  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   5.8  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   5.8  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   5.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 103 VFSNHSLQTPRNDWNRRLPI**MLFLV 23
           ++ N S+QTP N +   L +  +LFL+
Sbjct: 58  IWRNPSMQTPTNYYLFNLAVSDLLFLI 84


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 166 NCFNNYHSVYYHPVGIPRM 222
           N +NNY  +YY+ + I ++
Sbjct: 344 NNYNNYKKLYYNIINIEQI 362


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 518 KNIFDHCLERAISILVQTLNFT 583
           KNI DHC+    S++V  +  T
Sbjct: 817 KNINDHCVTTEQSVVVTNVTTT 838


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 YQQVNCFNNYHSVYYH 201
           Y   N +NNY  +YY+
Sbjct: 97  YNNNNNYNNYKKLYYN 112


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 YQQVNCFNNYHSVYYH 201
           Y   N +NNY  +YY+
Sbjct: 97  YNNNNNYNNYKKLYYN 112


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 YQQVNCFNNYHSVYYH 201
           Y   N +NNY  +YY+
Sbjct: 97  YNNNNNYNNYKKLYYN 112


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 YQQVNCFNNYHSVYYH 201
           Y   N +NNY  +YY+
Sbjct: 97  YNNNNNYNNYKKLYYN 112


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 YQQVNCFNNYHSVYYH 201
           Y   N +NNY  +YY+
Sbjct: 97  YNNNNNYNNYKKLYYN 112


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 YQQVNCFNNYHSVYYH 201
           Y   N +NNY  +YY+
Sbjct: 97  YNNNNNYNNYKKLYYN 112


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 YQQVNCFNNYHSVYYH 201
           Y   N +NNY  +YY+
Sbjct: 97  YNNNNNYNNYKKLYYN 112


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 YQQVNCFNNYHSVYYH 201
           Y   N +NNY  +YY+
Sbjct: 97  YNNNNNYNNYKKLYYN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,248
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)