Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0220
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29980.1 68417.m04264 expressed protein                             29   2.0  
At5g25050.1 68418.m02969 integral membrane transporter family pr...    28   4.6  
At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein c...    28   6.1  

>At4g29980.1 68417.m04264 expressed protein
          Length = 169

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 435 FLLLLSIIGLCSYTHF*YFTSGRNNYIVKIYLIIA*NGQFQFW 563
           FLL+++II + S T   + T+ +N    KI   +  +G F+ W
Sbjct: 10  FLLIIAIITITSSTSLPFLTTEQNQIATKIIDAMVSSGSFEDW 52


>At5g25050.1 68418.m02969 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains 7 transmembrane domains;
           contains Pfam PF03092: BT1 family; contains TIGRFAMS
           TIGR00788: folate/biopterin transporter
          Length = 499

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 141 CSYKMKLFSVNFESSLIIVYRPHAMIGIEDYLF 43
           C +   LF+++    LI+V+R +   G+ DYLF
Sbjct: 331 CLWTQLLFALSGMLDLILVFRLNLKFGLPDYLF 363


>At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 160

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 637 LATDNCGLSKNERNNLMCRK 578
           L T+NCG++ N   N MC+K
Sbjct: 25  LCTNNCGVTANPATNNMCQK 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,589,289
Number of Sequences: 28952
Number of extensions: 230947
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)