Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0219
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0620 - 24491055-24491710,24491794-24491986,24492165-244939...    29   2.6  
04_01_0183 + 2079879-2080084,2080994-2081122,2081204-2081426,208...    28   7.8  

>02_04_0620 -
           24491055-24491710,24491794-24491986,24492165-24493991,
           24494245-24494304,24494808-24494916,24496393-24496522,
           24498740-24498848
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 158 HILGQAIINSHGTGNISYSKLFLQNFLPDCVKNTFLFD 45
           H+L Q I++S G  +   S LF    LPDC  +  LF+
Sbjct: 857 HVLVQNIMSSAGLDDAQSSMLFTGWHLPDCPLDPILFN 894


>04_01_0183 +
           2079879-2080084,2080994-2081122,2081204-2081426,
           2081569-2081824,2082358-2082550,2082602-2082815,
           2082912-2083025,2083284-2084000
          Length = 683

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = -2

Query: 258 EQNHR-CAWHLLRST*ENI--IPPSRCLGHVEFY---IEPHIRPGYHK-FTWDRQYKLLK 100
           E  HR C WH+L+S  EN+  I   R     EF+    EP     + K + WD + K   
Sbjct: 287 ETTHRVCKWHILKSAKENLGNIYSKRSSFKQEFHRVLNEPQTEAEFEKAWMWDMKKKWAP 346

Query: 99  IVPTKFF 79
               +FF
Sbjct: 347 AYFREFF 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,463,010
Number of Sequences: 37544
Number of extensions: 373238
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)