Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0219
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               29   3.4  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           29   3.4  

>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 173 STCPRHLEGGMIFSYVLLKRCHAHL*FCSFYNGGTLQSCI 292
           +TC  H+      +Y+ +  CH H+   + +N  T+  C+
Sbjct: 398 TTCHNHITSHQGHNYITVTTCHNHITVTTCHNHTTVTKCL 437


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +1

Query: 316 TEDTSTLESSFSSVL*FRKFHTN*IR*KHRVVLCELPEIDFSDSHFKGIFFNMCNM*TKP 495
           TEDT+ +E + ++        T  ++ K    L E+PE  FSD H          + T P
Sbjct: 164 TEDTNIIEITINNT------STTQVKIKRFSTLEEVPEFSFSDKHGLTNARKNYKIITIP 217

Query: 496 INARYSI*YSVHRTKIRIFLL 558
           +N +Y I      T + +F L
Sbjct: 218 VNKQYQISAVFKPTSLGVFKL 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,782,609
Number of Sequences: 59808
Number of extensions: 445871
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)