Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0219
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.66 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +2

Query: 59  YFLHNQAKNFVGTILSSLYC-----LSHVN-L**PGLICGSI*NSTC 181
           YFL++++K+F+  I  +L C     LS  N    P   C S  N+TC
Sbjct: 126 YFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTC 172


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 268 WRYFTVLYCYN 300
           W Y+   YCYN
Sbjct: 213 WGYYAYPYCYN 223


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 135 YDSLA*YVVLYKIQHVRDTWREV*YFLM 218
           Y + + Y  L  I H  D W    YF+M
Sbjct: 124 YSNRSQYEFLNAIHHYDDIWLPDTYFIM 151


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 135 YDSLA*YVVLYKIQHVRDTWREV*YFLM 218
           Y + + Y  L  I H  D W    YF+M
Sbjct: 124 YSNRSQYEFLNAIHHYDDIWLPDTYFIM 151


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 135 YDSLA*YVVLYKIQHVRDTWREV*YFLM 218
           Y + + Y  L  I H  D W    YF+M
Sbjct: 175 YSNRSQYEFLNAIHHYDDIWLPDTYFIM 202


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 135 YDSLA*YVVLYKIQHVRDTWREV*YFLM 218
           Y + + Y  L  I H  D W    YF+M
Sbjct: 124 YSNRSQYEFLNAIHHYDDIWLPDTYFIM 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,509
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)