Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0219
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05930.1 68414.m00622 hypothetical protein contains Pfam prof...    28   4.9  
At5g43450.1 68418.m05312 2-oxoglutarate-dependent dioxygenase, p...    27   8.6  
At1g29660.1 68414.m03625 GDSL-motif lipase/hydrolase family prot...    27   8.6  

>At1g05930.1 68414.m00622 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 318

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 587 LRYPPPCIDNLLMPEGSWSPFNQPFSWDY 673
           LRYP P  +N   P G+ S  N PF  DY
Sbjct: 76  LRYPQPNFEN---PNGASSSLNLPFEEDY 101


>At5g43450.1 68418.m05312 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967)
          Length = 362

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 448 DCLRNLFQVIHRAPPC 401
           DCL+ LF + H  PPC
Sbjct: 208 DCLKGLFMLCHYYPPC 223


>At1g29660.1 68414.m03625 GDSL-motif lipase/hydrolase family protein
           low similarity to family II lipase EXL1 [Arabidopsis
           thaliana] GI:15054382; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 364

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 476 VTCKPNL*MQGTQFSTVCIER 538
           + C PN   QG+Q  T C+ER
Sbjct: 223 IGCSPNALAQGSQDGTTCVER 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,080
Number of Sequences: 28952
Number of extensions: 320757
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)