Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0218
         (612 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4EA9 Cluster: PREDICTED: similar to CG7002-PA;...    33   5.3  
UniRef50_A2A8L9 Cluster: Jumonji domain containing 2A; n=10; Eut...    32   9.3  

>UniRef50_UPI00015B4EA9 Cluster: PREDICTED: similar to CG7002-PA; n=1;
            Nasonia vitripennis|Rep: PREDICTED: similar to CG7002-PA
            - Nasonia vitripennis
          Length = 3772

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 590  KIPPK*AVGVFAWKLCFLVISLSIGFWQR-INQISIDRYCRRDSCNALSCSTASSQE 423
            K+ PK A    AWK+C LV   S G   + +N+      C  +SC  LS   A+ QE
Sbjct: 2605 KVCPKEAQEA-AWKMCTLVRDASFGACDKALNRERFVSSCLENSCACLSSGNATDQE 2660


>UniRef50_A2A8L9 Cluster: Jumonji domain containing 2A; n=10;
            Euteleostomi|Rep: Jumonji domain containing 2A - Mus
            musculus (Mouse)
          Length = 1033

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 539  LVISLSIGFWQRINQISIDRYCRRDSCNALSCSTASSQE 423
            +V+    GFWQ     +   YCR D C   +C  + S++
Sbjct: 946  IVVMSESGFWQHFGSGTSSCYCRLDDCGLFACPWSVSKQ 984


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,746,059
Number of Sequences: 1657284
Number of extensions: 10354268
Number of successful extensions: 22093
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22092
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)